Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34650 511 / 0 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT4G26610 359 / 1e-120 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G40030 358 / 4e-120 Protein kinase superfamily protein (.1) AT5G47750 360 / 1e-119 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT1G79250 349 / 5e-116 AGC1.7 AGC kinase 1.7 (.1.2) AT2G44830 355 / 1e-115 Protein kinase superfamily protein (.1) AT3G12690 343 / 1e-113 AGC1.5 AGC kinase 1.5 (.1.2.3) AT3G27580 342 / 6e-113 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT5G03640 347 / 3e-111 Protein kinase superfamily protein (.1) AT3G52890 346 / 7e-111 KIPK KCBP-interacting protein kinase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039105 [exp] 356 / 4e-118 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10016629 [exp] 356 / 6e-118 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 355 / 7e-118 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 352 / 1e-117 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10020571 [exp] 355 / 4e-116 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10020572 [exp] 343 / 8e-115 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10006273 [exp] 351 / 1e-114 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10022534 [exp] 345 / 3e-114 AT5G47750 709 / 0.0 D6 protein kinase like 2 (.1) Lus10006272 [exp] 339 / 3e-113 AT3G44610 591 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G093400 [exp] 397 / 2e-135 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.017G075400 [exp] 358 / 6e-120 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.014G047500 [exp] 363 / 2e-119 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.016G004900 [exp] 359 / 4e-119 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 356 / 7e-118 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.002G137700 [exp] 359 / 1e-117 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.008G080600 [exp] 353 / 7e-117 AT1G79250 684 / 0.0 AGC kinase 1.7 (.1.2) Potri.009G146700 [exp] 359 / 1e-116 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.004G186300 [exp] 357 / 7e-116 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 348 / 4e-115 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036150 pacid=23141253 polypeptide=Lus10036150 locus=Lus10036150.g ID=Lus10036150.BGIv1.0 annot-version=v1.0 ATGAGCGATTCATGGGACAGTGCCTACAGCCGCCTCTCCTTTGACGTAACCACCACCAGCTCTTCGCCCGATAATTTCACTCTCAAGCCCCACCGCTCCT CCGATTTCGCCTACTCCACCATTCGCAGCAGGACAGGACTCACCTTCCGCGACTTCCACCTCATCCAACGAATCGGTGCGGGAGACATCGGCACAGTGTA CCTCTGCCGCCTTAATCGGGACTCAGAATGCCGATATGCGATGAAAGTCGTGAATAAGGATGCTCTGGCTTTGAAGAAGAAGGAGCAGAGAGCTGAGGTG GAGAAGAAGATCTTGAAGATGCTTGATCATCCGTTTCTCCCTACTCTCTATGCCGAGTTCGAAGCCTCCCATTTCTCTTGCATTGTCATGGAGTACTGCT CCGGCGGTGATTTGCACTCCCTCCGTCACAAGCAGCCATTTCACCGCTTTTCTCTCACCTCCGCAAGGTTTTATGCAGCAGAGGTACTTGTAGCGTTGGA GTATCTTCACATGATGGGAATCATCTACAGAGACCTGAAACCAGAAAACGTTTTAGTTAGATCAGACGGTCACATCATGCTCTCCGATTTTGACCTTTCG TTTTGCTCACAAACAGTCCCCGTCGTCGAATCATCAATATCCCCATCCTCTTTCGATGCCGCCGGGGGTGAACTCCCCTCGTTTTCCTGTCTTCCGGGCT GGACCTTGAACAGCTCCAAACGGCGGCGGCGGCAGATATTCGTGGCGGAGCCCGTGACGGCCCGGTCATGTTCGTTGGTAGGGACTCACGAGTATGTGGC CCCGGAGGTGGCCTCTGGAGGGTCCCACGGAAATGCTGTTGACTGGTGGGCTCTAGGGATTTTCATTTACGAGCTCATCTATGGAAAGACTCCCTTCAAG AATAGTAACAGTAATCAGACGACGACGCTCCGGAATATAGTGAAGAGGCCGTTGGTTTTCCCGACCAGGACGGCGGTGTCGATGATGGAGGAGCATGCAC GTGACTTGATATCTGGGTTGCTGGACAAGGACCCAAGCCGTCGTCTGGGTTCCAAGAGGGGATCGGCGGACATAAAAACGCACGCGTTTTTCAAGGGGAT TAATTTGGCTCTGATAAGGACGGTGACGCCGCCTACGGTGCCAAGTAGTATGCGGCGAGAGACAACTACAGCGTCGTTGAATAGGAATAGGAGAGCGGGG CCGCATTTTGACTATTTCTAA
AA sequence Show only first row Show all	>Lus10036150 pacid=23141253 polypeptide=Lus10036150 locus=Lus10036150.g ID=Lus10036150.BGIv1.0 annot-version=v1.0 MSDSWDSAYSRLSFDVTTTSSSPDNFTLKPHRSSDFAYSTIRSRTGLTFRDFHLIQRIGAGDIGTVYLCRLNRDSECRYAMKVVNKDALALKKKEQRAEV EKKILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHKQPFHRFSLTSARFYAAEVLVALEYLHMMGIIYRDLKPENVLVRSDGHIMLSDFDLS FCSQTVPVVESSISPSSFDAAGGELPSFSCLPGWTLNSSKRRRRQIFVAEPVTARSCSLVGTHEYVAPEVASGGSHGNAVDWWALGIFIYELIYGKTPFK NSNSNQTTTLRNIVKRPLVFPTRTAVSMMEEHARDLISGLLDKDPSRRLGSKRGSADIKTHAFFKGINLALIRTVTPPTVPSSMRRETTTASLNRNRRAG PHFDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34650		ABR, PID	PINOID, ABRUPTUS, Protein kina...		Lus10036150 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Lus10030514 [exp]	5.9	0.9342
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10040808 [exp]	6.6	0.9330
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	9.8	0.9146
AT2G17580			Polynucleotide adenylyltransfe...		Lus10016699 [exp]	9.9	0.9064
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10020397 [exp]	12.4	0.9112
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10032262 [exp]	13.6	0.9152
AT5G49100			unknown protein		Lus10037496 [exp]	13.7	0.8933
AT2G39810		HOS1	HIGH EXPRESSION OF OSMOTICALLY...		Lus10010990 [exp]	13.7	0.9078
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	18.1	0.9065
AT1G80640			Protein kinase superfamily pro...		Lus10026091 [exp]	19.4	0.8899

Compare expression of checked genes

Lus10036150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.