Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21070 382 / 5e-118 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT1G04020 359 / 7e-112 ROW1, ATBARD1, BARD1 breast cancer associated RING 1 (.1.2) AT3G15120 59 / 1e-08 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G32950 50 / 5e-06 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02110 50 / 1e-05 transcription coactivators (.1) AT5G44280 49 / 1e-05 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT3G07200 47 / 1e-05 RING/U-box superfamily protein (.1.2) AT1G03770 48 / 3e-05 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G18660 45 / 0.0002 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4) AT5G48655 44 / 0.0002 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022895 [exp] 324 / 6e-99 AT1G04020 421 / 2e-137 breast cancer associated RING 1 (.1.2) Lus10024930 [exp] 192 / 2e-52 AT1G04020 201 / 3e-56 breast cancer associated RING 1 (.1.2) Lus10017935 [exp] 69 / 2e-11 AT3G15120 1385 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013677 [exp] 68 / 4e-11 AT3G15120 1474 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029990 [exp] 50 / 1e-05 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10018609 [exp] 49 / 2e-05 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10001455 [exp] 49 / 2e-05 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10039845 [exp] 49 / 2e-05 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10035332 [exp] 48 / 3e-05 AT2G32950 1088 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358100 [exp] 483 / 2e-155 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.002G259000 [exp] 319 / 3e-96 AT1G04020 472 / 3e-156 breast cancer associated RING 1 (.1.2) Potri.011G141400 [exp] 70 / 8e-12 AT3G15120 1478 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G047000 [exp] 53 / 6e-07 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G056300 [exp] 52 / 1e-06 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.002G245500 [exp] 50 / 1e-06 AT5G48655 154 / 2e-47 RING/U-box superfamily protein (.1.2.3) Potri.014G191400 [exp] 50 / 2e-06 AT5G48655 158 / 8e-49 RING/U-box superfamily protein (.1.2.3) Potri.001G082200 [exp] 50 / 3e-06 AT3G07200 86 / 2e-20 RING/U-box superfamily protein (.1.2) Potri.004G002700 [exp] 49 / 1e-05 AT2G32950 832 / 0.0 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.003G148300 [exp] 48 / 1e-05 AT5G48655 77 / 6e-17 RING/U-box superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [flax] [poplar] BRCT-like PF00533 [flax] [poplar] BRCT BRCA1 C Terminus (BRCT) domain
Representative CDS sequence Show only first row Show all	>Lus10036151 pacid=23141166 polypeptide=Lus10036151 locus=Lus10036151.g ID=Lus10036151.BGIv1.0 annot-version=v1.0 ATGGCAGATCCAATCCATTTGGAGAGGATGGGCAAAGAGCTCAAGTGTCCAATCTGCTTGAGTCTGCTGAGTTTTGCAGTTTCGCTCTCCTGCAATCATG TCTTCTGCAACTCCTGTATTTCACAAGCAATGAAGTCTCATTCGGATTGCCCAATCTGCAAATTGCCTTATCGGCGGAGAGAGGTCCGTCCGGCTCCTCA CATGGATAATTTGGTGAGCATATACAGAAGCATGGAAATTGCTTCAGGTTTCAATATATTTGTTACTCAGACAGATCCGGCAGCTAAATCTCCAGTTGTT TGTGGAAACCCTGGATTCACCCATCTTGCTTTCATGTCAACAGACAAGGCAACTCAAGCTAGCCTTTGCACAATCAGTGCTGCAAAACCTATTGCTTGTC CCCACAAGGAAAGGGTTGAGAATCGAAAACCTAGAACAAGTGTGGGGTCAAAGAAAGGTATCAGAAAGAAGCAAGAGGGTTCTGCTCCCTCAACTTCAAA GCCTTCATTTCCAATCAAGAAGAGGGTTCAGGTGCCACAGTATCCACTTTCTGAAACCCCAATCAGGGGTGCTATGGGAAATCAAGTGGCCTCAGAGGGG ATTCCGGTTACCAGTGAAGACGGAGACCTGGCTCTTTCACCTTTATTCTGGTTGAGGGATGACGACGCTGAGAGCTCGAGTCAAACTGTTGATGATGACG AATTTCTTAGTTTATCGAGTCCAGGTATTCCCACTTTCAGTGACATCAAGGATTCAAGTAACAGCGAGTCCGCCAGTTTATCACCAACTGAAGAAGAAAT TAGTGGAAACCCACTTTTCGCTAATGATTCTGATTGCGAGCCTTTTGGATGCACGCAAAGGCCTAACTCCCTTGAAATTTTCTTAACCCCAATTGAGATG CAGGACGACAGCACTCACAGAGTTAATCAGATTCACAAAGCTGCATCATCTGCAGCTCTGAATGGAGTTACAGATGAAGTGTCATCGGATGCATCCTGTC CAGAAGACGGAAATGCACAATCAGTTCATGAATATCCTAAAAAGAGACTTAGACATGCAGGCGGGGGAATTCTAAGGAGATGCCCTGAAGTGAATGGTAG GACCTGTTTGAATATACTTGGCGCTCCAACTGTGCAATCTGGAAAACCTGGTCGATCTGATAGAAAGAGCATTTCGTTTAACTTGGAGAGGGCAGAGAAG GCTAATCTGGGTACTTCTGTAGATGAATCAGCATTTCAAAACAATACTCTTATTGCTGAAGAAGCTGTCAGTCTAGCTGACGATGAAATGTTGGATGGGT GTGGTACTTCATTTAGTAAGAGCCACGAGAGTGATGGACATGGTCAATCCAAGAAAACTCGAAAAGTACGCAGAAAGAATATTGGTAGCAAATCTGATTT CTCCATGAGGTTGAAAAAACGGAAGCTGGTTTCTGGAGAAATTGATACGGGCGTTGAAGTTCATGAAAGGAGCAACAATATGGATAAAGAGAAACAGCAA TGTGATGGTAAAATCGATATAATAAAATGTGCATTTTGTCATTCTTCCGAAGTCTCAGAGGCTTCAGGGCAGATGGTACACTATTACAATGGTAGGCCTG TAGCAGCAAATGACGTTGATCAGTCCAAAGTGTTACACTGTCATAAAAGTTGTGCAGAGTGGGCACCCAATGTCTATTTTGAGGGTGATGTAGCAGTTAA TCTTGAAGCCGAGTTAGCTAGAAGCAGACGAATAAAATGCAGTTGTTGTGAACTCAAGGGTGCTGCTCTTGGATGCTATGAGAAAACTTGTCGCAAGAGT TTCCATGTTCCCTGTGCCAAGATGATTCCTGAATGTCGATGGGATAATGAAAATTTCGTCATATTATGTCCTATTCATTCTTCTGCAAAGTTTGCAATTA AAGGGAGAGGTTCTCAGTCGAGAAAAACAGATGTATGCAGTGAAAGACAAAATAGAAATAAGCGTAAAGGCGTAATTGATTCGTGCTTTCTACCACATAA GCTGGTTCTTTGTTGCTCAGCTCTCACGGATGCAGAAAGGGAACTTGTGGGTGAGTGTGAGACAAAATTTGGAGCTAAAATCATGAAGAAATGGGATCCT AGTGTTACCCATATCATTGCTTCGACTGACACAAACTGGGCATGCAAAAGAACCCTAAAAACCTTAATGGGAATATTGTGGGGAAAGTGGATCCTCAACA TTGACTGGATCAAGGATAGTGTGACAGCCCAGAAAATCATGGAGGAGGAGCCCTACGAAATCAAGGTGGATATTCATGGTATAAAGGATGGTCCACGACT TGGAAGACTCCGGATCCAAAACAAGCAACCGAAAATTCTTGAAGGTTTCAAGTTGTACTTCATGGGAGACTTCATATCCTCGTACAAGGGATATCTGCAA GAGCTTGTCATCGTTGCTGGAGGTAGCATACTGCACAGGAAACCAATTAAGGAATCTGTAGCAGGTTCAACCTTAATTGTTTACAACTCGGAGGTGCTTG AAAATCAAGACCAAAAGATGATGGATACAATTCTGAGCCACAGGGAATGTGATGCCAGGGCCATGGCAGCCTCCACGGGAGCTAAAGCAGTAAGCAATAT ATGGGTTTTGAACTCCATTGCAGCGTCCCAACTTCAAAGCTTCCCTTTATAA
AA sequence Show only first row Show all	>Lus10036151 pacid=23141166 polypeptide=Lus10036151 locus=Lus10036151.g ID=Lus10036151.BGIv1.0 annot-version=v1.0 MADPIHLERMGKELKCPICLSLLSFAVSLSCNHVFCNSCISQAMKSHSDCPICKLPYRRREVRPAPHMDNLVSIYRSMEIASGFNIFVTQTDPAAKSPVV CGNPGFTHLAFMSTDKATQASLCTISAAKPIACPHKERVENRKPRTSVGSKKGIRKKQEGSAPSTSKPSFPIKKRVQVPQYPLSETPIRGAMGNQVASEG IPVTSEDGDLALSPLFWLRDDDAESSSQTVDDDEFLSLSSPGIPTFSDIKDSSNSESASLSPTEEEISGNPLFANDSDCEPFGCTQRPNSLEIFLTPIEM QDDSTHRVNQIHKAASSAALNGVTDEVSSDASCPEDGNAQSVHEYPKKRLRHAGGGILRRCPEVNGRTCLNILGAPTVQSGKPGRSDRKSISFNLERAEK ANLGTSVDESAFQNNTLIAEEAVSLADDEMLDGCGTSFSKSHESDGHGQSKKTRKVRRKNIGSKSDFSMRLKKRKLVSGEIDTGVEVHERSNNMDKEKQQ CDGKIDIIKCAFCHSSEVSEASGQMVHYYNGRPVAANDVDQSKVLHCHKSCAEWAPNVYFEGDVAVNLEAELARSRRIKCSCCELKGAALGCYEKTCRKS FHVPCAKMIPECRWDNENFVILCPIHSSAKFAIKGRGSQSRKTDVCSERQNRNKRKGVIDSCFLPHKLVLCCSALTDAERELVGECETKFGAKIMKKWDP SVTHIIASTDTNWACKRTLKTLMGILWGKWILNIDWIKDSVTAQKIMEEEPYEIKVDIHGIKDGPRLGRLRIQNKQPKILEGFKLYFMGDFISSYKGYLQ ELVIVAGGSILHRKPIKESVAGSTLIVYNSEVLENQDQKMMDTILSHRECDARAMAASTGAKAVSNIWVLNSIAASQLQSFPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21070		ATBRCA1	ARABIDOPSIS THALIANA BREAST CA...		Lus10036151 [exp]	0	1
AT2G42120		POLD2	DNA polymerase delta small sub...		Lus10016262 [exp]	2.0	0.9427
AT3G57060			binding (.1.2)		Lus10039012 [exp]	2.4	0.9509
AT4G01270			RING/U-box superfamily protein...		Lus10005127 [exp]	3.3	0.9367
AT2G20635			ATP binding;protein kinases;pr...		Lus10033673 [exp]	3.6	0.9346
AT4G15140			unknown protein		Lus10010477 [exp]	3.9	0.9427
AT4G16970			Protein kinase superfamily pro...		Lus10004357 [exp]	4.6	0.9432
AT3G20070		TTN9	titan9 (.1.2)		Lus10026248 [exp]	6.6	0.9282
AT3G16730		HEB2	hypersensitive to excess boron...		Lus10024756 [exp]	7.5	0.9397
AT1G20693		HMGBETA1, NFD2,...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10035991 [exp]	7.9	0.9301
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10013931 [exp]	7.9	0.9393

Compare expression of checked genes

Lus10036151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.