Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016933 [exp] 99 / 4e-28 ND / Lus10006149 [exp] 90 / 1e-23 ND / Lus10027769 [exp] 87 / 1e-22 ND / Lus10036295 [exp] 73 / 4e-17 ND / Lus10007177 [exp] 72 / 4e-17 ND / Lus10036641 [exp] 70 / 2e-16 ND / Lus10007182 [exp] 67 / 1e-15 ND / Lus10003534 [exp] 58 / 2e-12 ND / Lus10012673 [exp] 56 / 2e-10 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036152 pacid=23141092 polypeptide=Lus10036152 locus=Lus10036152.g ID=Lus10036152.BGIv1.0 annot-version=v1.0 ATGTTATCAAAGAATAGAGAAGTCGGAAAGAGTGCGTCATATAAAATTTGTCAAGAAGCCTTCGGTGGTGTTTGGTTCGAGTTCAAGCAGCACACAAAGT CCTTTCCTCTCAGAGTTCAAGTCGAGGACCCGGTCATGCGACAGTTTGCGAAGCTTATGCTTGCGGAGTTTCAGAAGCAAACTGGTACTCCCTCCCACGA GATGCAGGCAATGACTCGAATCTTGGAAGGTTCTGTACCGGACTCATCTAGAGCTTCCGGATCATCAGGAGCTTCCAAAGGAAATAGACCGGCCGAGGAT AGCCCATCTAACAGCGGATACGGAACCGCCGTTAGAATTCCTCCCATTACTTAA
AA sequence Show only first row Show all	>Lus10036152 pacid=23141092 polypeptide=Lus10036152 locus=Lus10036152.g ID=Lus10036152.BGIv1.0 annot-version=v1.0 MLSKNREVGKSASYKICQEAFGGVWFEFKQHTKSFPLRVQVEDPVMRQFAKLMLAEFQKQTGTPSHEMQAMTRILEGSVPDSSRASGSSGASKGNRPAED SPSNSGYGTAVRIPPIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10036152 [exp]	0	1
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	2.6	1.0000
					Lus10000824 [exp]	3.7	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	5.3	1.0000
					Lus10011629 [exp]	6.5	1.0000
					Lus10003272 [exp]	6.9	1.0000
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	7.9	1.0000
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10025682 [exp]	8.4	1.0000
					Lus10010826 [exp]	8.9	1.0000
					Lus10029832 [exp]	9.2	1.0000
AT5G09280			Pectin lyase-like superfamily ...		Lus10031867 [exp]	9.9	1.0000

Compare expression of checked genes

Lus10036152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.