Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34660 1963 / 0 EST4, ATMRP2, ABCC2, AtABCC2 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) AT1G30400 1954 / 0 ATABCC1, EST1, ATMRP1 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 1, Arabidopsis thaliana ATP-binding cassette C1, ATP-binding cassette C1, multidrug resistance-associated protein 1 (.1.2) AT1G30420 1850 / 0 ATMRP12, ABCC11 ATP-binding cassette C11, multidrug resistance-associated protein 12 (.1) AT1G30410 1496 / 0 ATMRP13, ABCC12 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) AT3G60970 602 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT3G62700 598 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT1G04120 597 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G60160 593 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT2G47800 587 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G59140 571 / 1e-177 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023275 [exp] 1947 / 0 AT2G34660 2553 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10038530 [exp] 1947 / 0 AT2G34660 2543 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Lus10024965 [exp] 643 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10023139 [exp] 617 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10022858 [exp] 617 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10042023 [exp] 607 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10018027 [exp] 602 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10011498 [exp] 590 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10027567 [exp] 585 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G091200 [exp] 2032 / 0 AT2G34660 2491 / 0.0 Arabidopsis thaliana ATP-binding cassette C2, ATP-binding cassette C2, multidrug resistance-associated protein 2 (.1.2) Potri.004G034800 [exp] 1707 / 0 AT1G30410 2242 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.004G034700 [exp] 1693 / 0 AT1G30410 2216 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.011G043100 [exp] 1524 / 0 AT1G30410 2090 / 0.0 ATP-binding cassette C12, multidrug resistance-associated protein 13 (.1) Potri.014G180100 [exp] 636 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.014G130500 [exp] 613 / 0 AT3G62700 2059 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.014G193400 [exp] 590 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.002G205500 [exp] 587 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.008G179500 [exp] 585 / 0 AT3G13080 1261 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G182601 [exp] 583 / 0 AT2G07680 1759 / 0.0 ATP-binding cassette C13, multidrug resistance-associated protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10036153 pacid=23141001 polypeptide=Lus10036153 locus=Lus10036153.g ID=Lus10036153.BGIv1.0 annot-version=v1.0 ATGGCTTGGGAGTCGTTGGTTTGGTATTGTAAACCAGTGGCTAATGGAGTTTGGGCAAAACAACTGGATTCAGCATTTGGAGCATACACTCCTTGTGCCA TCGACTCTCTAGTAATTTGTATATCTTATTTGACGCTCTTTGGACTATGCTTCTATCGGATGTGGCTGATTAAAGATCCAGCAGTTCAAAAGTACTGTCT AAGGACAAAATATTACAACTACATATTGGTATCCCTTGCTGCTTACTGTACAGCTGAGCCCATATTTAGGCTGGTAACCAGTATCTCACTCTTTAATCTG GATGGAGACATTGGCTTTCCTCCCTTTGAGATGGTTTCATTGGTCATTGAGACCTTCTCCTGGTGTTCCATGCTTATTATGGTTAGCGTGGAAATTAAAA TATATATCCGGAAGTTCCGATGGTATGTGAGATTCGGAGTCATTTATGTGCTAATAGCAGAATCTGTAGTTCTCAATCTCATTCTACCAATGAGAGAATA TTCAAGCAGAATGGCCTTTTACATGTATGTGGGAACATTTGTCTCCAAGGTTTTATTTGGACTTCTTCTTTTTGTTCACGTGCCCACACTGGAACCATAT CCTGGCTATGTTGTGTTAGAATCTGAATCCAATGACAACGGTGAGTATGAGGCCCTCCACGGAGCAGAGCAGATATGTCCTGAGAGGCATGTGAATATTT TCTCCAGGATATATTTTGGATGGATGACTTCACTTATGGAGCAAGGCTACAAGAAACCCATCACTGAAAAGGATGTCTGGAAACTGGATGCATGGGATGA GACGGAAACACTGATTAACAAGTTCCAGAAATCTTGGGCTGAAGAATCCAAAAAGAAGAATCCATGGCTATTAAAAGCTCTAAATAATAGCCTCGGAGGA AGGTTTTGGCTTGGAGGACTGTTTAAGATCGGCAACGATCTTTCTCAGTTCGTGGGGCCTGTTATCCTCAACCATCTCCTACAGTTGAAAATTGTGTCTT TTTGCTTATATGATTGGCATTTTGGGTTTGAATTTGGTATTCCATTACATTTTCAGCAAATATGCCAACAACTTCATAACTTATGGTCAGCGCCATTCAG AATCACCTTGTCTATGGTGCTTCTCTACCAACAGTTGGGTGTTGCTTCTCTTTTTGGATCATTGTTGCTTCTCCTCATGATTCCTTTGCAGACAGTCGTG ATAAGCAAAATGAGAAAACTAACAAAGGAAGGACTCCAAAGGACTGATAGGAGAGTCAGTCTCATGAATGAAATCCTTGCTGCGATGGAGACTTTTAATA GTTTTGTGCTCAACAGCATACCGGTTATCGTGACATTGGTTTCGTTTGGAACTTTCACGTTGCTTGGGGGAGATTTAACTCCTGCAAGGGCATTTACATC GCTATCTCTGTTTCAAGTGCTACGATTTCCTTTAAACATGCTTCCCAGCTTATTAAGCCAGGTTGTAACTGCAAATGTCTCTATCCACCGTTTAGAGGAA CTATTTTTGTCAGAAGAGAGAACTCTGACAAAAAATCCACCACTTGAACCAGGACTTCCAGCCATCTCTATCAGGGATGGGTATTTTTCATGGGAATCAA AGGCAGAAAATCCTACTTTGTCAAATATCAATCTTGATATACAAACTGGCAGCTTAGTTGCAATCGTTGGTGGGACTGGAGAAGGAAAGACTTCACTTGT GTCGGCAATGCTTGGAGAATTGCCTGCGCTAGCAGATACCAATGTAGCACTTAGAGGGACTGTTGCTTATGTTCCTCAAGTTTCATGGATTTTCAATGCT AGTTTACGTGACAACATATTGTTTGGATCTGTGTTTGAACCTGAGCGATACTGGAAAACAATTGATGTGACAGCATTATACCATGATCTTGACATACTTC CTGGTCATGACCTGACGGAGATAGGTGAAAGAGGAGTCAATATCAGTGGTGGTCAAAAGCAAAGGGTATCAATGGCAAGGGCCATCTATTCTAATTCAGA TGTCTACATATTTGATGACCCTTTAAGTGCTCTAGATGCTCATGTTGGACGACAGGTGTTCAACAGATGCATCAAGGAAGAGTTGCAAGGAAAAACTAGG GTTCTTGTCACAAATCAACTACATTTTCTTCCTCAAGTGGATAAGATTATTGTTGTTAGCCAAGGAACTGTTAAAGAGGAGGGAACCTTTGAGGAACTAT CAAGAAGCGGCATGTTGTTCCAAAAATTAATGGAAAATGCAGGCAAGACGGAAGAAATGCAAGAACAGGTGGAGGAAGAACAACAAGATGGTACAAATAC TGAACATGTAGGGTTGAAACCCACAACTAATGGAGTGCATGAGATGACACAAAATATAAGCTACAACAAGAAAGGGAGAAGAGGTAAGTCCATGCTCATC AAGCAAGAAGAAAGGGAGACGGGCATCGTCAGTTGGAAAGTTTTAGACAGGTACACGAATGCATTAGGAGGCACAATGGTCGTTATGGTGCTGTTCACAT GCTACACGTTAACTGAAGTTCTTCGAGTTTCAAGTAGTCAATGGTTAAGCATTTGGACGAATCACAGCATTTCAGAAAGTTATAATCTTCCATTCTTCAT CTCCATTTATGCACTTCTGTCACTGGGGCAGGTAACTGTCACATTGGGAAACACTTATTGGTTGATCACTTCAAGCCTACGTGCAGCCAAAAGACTCCAT GATACCATGCTAGAGAACCTTTTACGAGCTCCGATGCTGTTCTTCCACACAAACCCACTGGGTCGAGTAATTAACAGGTTTGCAAAGGATCTGGGGGAAA TAGATCGTAATGTTGCTGGTTTTGCCAGCATGTTTCTGAACCAAGTCTGGCAGCTGCTTTCAACGTTTGCCCTGATAGGAATTGTGAGCACACTATCACT GTGGGCCGTAATGCCTCTTCTTATCTTGTTTTATTCAGCCTATCTGTACTACCAGTCTACATCCCGCGAAGTGAAACGCTTGGATTCAATTACCAGATCC CCAGTTTATGCGCAATTCGGAGAAGCACTAAATGGTTTGTCAAGTATACGTGCATACAAGGCATATGATCGGATAGCTGACATTAACGGGAAGACGATGG ACAACAATATCAGATTTACCCTTGTGAACATCAGCTCCAATCGTTGGCTCACCATAAGATTGGAAACATTGGGAGGAGTGATGATTTGGTTGATAGCTAC TTTTGCAGTCTTGGAAAATCAGAAGGCCGAAAACAGGGTTGCATTTGCTTCTACTATGGGTCTACTTTTGACGTACACTTTGAATATTACAAGTCTGTTG AGTGGAGTTCTAAGACAAGCGAGTAGAGCTGAAAATAGCTTCAATGCTGTTGAACGTGTGGGTGCATATATAGAGCTTCCTTCAGAGGCTCCGGCTATTG TCGAGAGCAATCGCCCACCACCTGGTTGGCCTTCGTCAGGATTGATCAAGTTTTCAGATGTTGTCCTGCGTTACAGACCAGAACTTCCTCCAGTATTGCA TGGATTATCATTCACAGTTTCTCCAAGTGAGAAGCTAGGTGTAGTTGGAAGAACTGGAGCAGGGAAGTCCAGCATGCTTAATGCCTTATTCAGAATTGTA GAGGTCGAAAGGGGAGAGATCATAATTGATGGATGTGATATTAGAAAAATGGGACTCGTCGATCTTCGTAAGGTTCTTACTATTATACCGCAAGCCCCAG TTCTTTTCTCTGGAACTGTGAGACTTAATCTTGATCCATTTAGTGAACATAATGACGCAGACCTCTGGGAGGCATTGGAGAGGGCACATCTTAAGGATAT AATCAGAAGTAATTCCCTTGGTCTCGATGCTGAGATACCTAATGACGGTTTGAACTTGTGTTGTTTCAAGGTCCTGGAAGGAGGAGAGAATTTTAGTGTT GGGCAGAGACAACTATTGAGTCTTGCTCGAGCGTTGCTGCGAAGATCGAAAATTCTCGTCCTTGATGAAGCAACAGCTGCTGTTGATGTTAGAACTGATG CTCTTATACAAAAGACAATCAGAGAAGAGTTCATGTCTTGCACAATGCTCGTTATTGCTCACAGACTAAATACTATCATAGACTGTGACAGAATTCTGGT GCTTGATGATGGTCGGGTTGCAGAACATGCCACCCCGGAGGAACTGCTCTCAAATGAAGAAAGTGCATTCTACAGCATGGTCCAGAGTACTGGATCAGCA AATGCTCAATATTTGCGCAACTTGGTGTTTGAAAGCAAAGAAATCGCCGTTGATGAGGAAATGAAAAAGAACCATCATGGCCCTAGGAAATGGCTGGCTT CCTCGAGATGGACAGCTGCTGCGCAATTTGCCTTAGCTGCTAGTCTCACTTCCTCAACAAATGATCTTCAAACTTTGGTTGTTGGAGATGACAATAACAT CCTCAAGCGAACGAAAGATGCTGTCATGACCCTTCAGGGAGTACTGCAAGGGACACATGACGAACTGATTGACAGTACTCTCCAGCAGCATCAAGTCCCC AGAGAAAGATGGTGGTCTACTCTATACCGAATAGTCGAAGGTCTAGCGATGATGAGTAGGCTGGCTAAGAACAAGATTCCGGATTCGGCATATGACTATG AGAACAAGCCCCTGAACTGGGAAAGTGACGAAGAACATTAG
AA sequence Show only first row Show all	>Lus10036153 pacid=23141001 polypeptide=Lus10036153 locus=Lus10036153.g ID=Lus10036153.BGIv1.0 annot-version=v1.0 MAWESLVWYCKPVANGVWAKQLDSAFGAYTPCAIDSLVICISYLTLFGLCFYRMWLIKDPAVQKYCLRTKYYNYILVSLAAYCTAEPIFRLVTSISLFNL DGDIGFPPFEMVSLVIETFSWCSMLIMVSVEIKIYIRKFRWYVRFGVIYVLIAESVVLNLILPMREYSSRMAFYMYVGTFVSKVLFGLLLFVHVPTLEPY PGYVVLESESNDNGEYEALHGAEQICPERHVNIFSRIYFGWMTSLMEQGYKKPITEKDVWKLDAWDETETLINKFQKSWAEESKKKNPWLLKALNNSLGG RFWLGGLFKIGNDLSQFVGPVILNHLLQLKIVSFCLYDWHFGFEFGIPLHFQQICQQLHNLWSAPFRITLSMVLLYQQLGVASLFGSLLLLLMIPLQTVV ISKMRKLTKEGLQRTDRRVSLMNEILAAMETFNSFVLNSIPVIVTLVSFGTFTLLGGDLTPARAFTSLSLFQVLRFPLNMLPSLLSQVVTANVSIHRLEE LFLSEERTLTKNPPLEPGLPAISIRDGYFSWESKAENPTLSNINLDIQTGSLVAIVGGTGEGKTSLVSAMLGELPALADTNVALRGTVAYVPQVSWIFNA SLRDNILFGSVFEPERYWKTIDVTALYHDLDILPGHDLTEIGERGVNISGGQKQRVSMARAIYSNSDVYIFDDPLSALDAHVGRQVFNRCIKEELQGKTR VLVTNQLHFLPQVDKIIVVSQGTVKEEGTFEELSRSGMLFQKLMENAGKTEEMQEQVEEEQQDGTNTEHVGLKPTTNGVHEMTQNISYNKKGRRGKSMLI KQEERETGIVSWKVLDRYTNALGGTMVVMVLFTCYTLTEVLRVSSSQWLSIWTNHSISESYNLPFFISIYALLSLGQVTVTLGNTYWLITSSLRAAKRLH DTMLENLLRAPMLFFHTNPLGRVINRFAKDLGEIDRNVAGFASMFLNQVWQLLSTFALIGIVSTLSLWAVMPLLILFYSAYLYYQSTSREVKRLDSITRS PVYAQFGEALNGLSSIRAYKAYDRIADINGKTMDNNIRFTLVNISSNRWLTIRLETLGGVMIWLIATFAVLENQKAENRVAFASTMGLLLTYTLNITSLL SGVLRQASRAENSFNAVERVGAYIELPSEAPAIVESNRPPPGWPSSGLIKFSDVVLRYRPELPPVLHGLSFTVSPSEKLGVVGRTGAGKSSMLNALFRIV EVERGEIIIDGCDIRKMGLVDLRKVLTIIPQAPVLFSGTVRLNLDPFSEHNDADLWEALERAHLKDIIRSNSLGLDAEIPNDGLNLCCFKVLEGGENFSV GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFMSCTMLVIAHRLNTIIDCDRILVLDDGRVAEHATPEELLSNEESAFYSMVQSTGSA NAQYLRNLVFESKEIAVDEEMKKNHHGPRKWLASSRWTAAAQFALAASLTSSTNDLQTLVVGDDNNILKRTKDAVMTLQGVLQGTHDELIDSTLQQHQVP RERWWSTLYRIVEGLAMMSRLAKNKIPDSAYDYENKPLNWESDEEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	0	1
AT3G16170		AAE13	acyl activating enzyme 13, AMP...		Lus10035861 [exp]	2.4	0.8174
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014437 [exp]	8.9	0.7948
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10028527 [exp]	16.0	0.8400
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Lus10009069 [exp]	19.5	0.7631
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10012307 [exp]	20.5	0.7917
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10023613 [exp]	25.6	0.8103
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	30.3	0.7523
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	31.7	0.8135
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Lus10023433 [exp]	32.0	0.8101
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	41.6	0.8087

Compare expression of checked genes

Lus10036153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.