Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21060 963 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 704 / 0 Galactosyltransferase family protein (.1) AT5G62620 701 / 0 Galactosyltransferase family protein (.1.2) AT1G27120 688 / 0 Galactosyltransferase family protein (.1) AT1G26810 327 / 1e-102 GALT1 galactosyltransferase1 (.1) AT3G06440 292 / 1e-89 Galactosyltransferase family protein (.1.2) AT1G53290 71 / 5e-13 Galactosyltransferase family protein (.1) AT3G14960 66 / 3e-11 Galactosyltransferase family protein (.1) AT2G26100 66 / 3e-11 Galactosyltransferase family protein (.1) AT1G22015 61 / 2e-09 DD46 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004256 [exp] 719 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 717 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 702 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 634 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 331 / 3e-104 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 327 / 2e-103 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 323 / 2e-102 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 323 / 4e-101 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 301 / 1e-92 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G011300 [exp] 1120 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 1118 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.015G067600 [exp] 721 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 706 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 702 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 345 / 9e-110 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.010G151600 [exp] 340 / 8e-108 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.008G086900 [exp] 333 / 4e-105 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 71 / 9e-13 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.006G228900 [exp] 67 / 2e-11 AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10036154 pacid=23141261 polypeptide=Lus10036154 locus=Lus10036154.g ID=Lus10036154.BGIv1.0 annot-version=v1.0 ATGAAGAGGTTAAAGGTGGAACCTTCAAGTGGTAGAAGGTTCAAACTATCGCATCTTCTACTAGGGGTAGCAGCATTGTATTTGGTCTTTTTAGCATCCA AGTTTCATCATTTTTTAGAGATTGCAGCCACGTTGAGTGGCGATGAGACTTATTTTGATACTGGGGGCGAGACTGGTCCGGAATCAGATTTGAGCAAGCC ATTGTTTAGCTCTGCTTATATGGATACATCTAACCATCAAAAATTGGAGGACAACCAGAATGAAGATGCACCCAACAAAGCAGCCATGGAAGAAGTGAAA GGAGGAGGATCCAAACCTCTGAAACCCATTCAGCACTATGGGCGAATAACTGGAGAGATTTTGAGGCGATTGAATAGGACTAGTGATATGTCCTCACTTG AGAGAATGGCAGATGAAGCATGGACCCTTGGGTTAAAGGCATGGCAAGAAATGGGTAAGTATAAAGGGGAGGATATTGGACAGACTTCTTCTGTATTGGA TGGTAAACCAGAGTCATGTCCTCTGTGGTTGTCGATGAATGGAGAAGAATTGGATAGAGGGGACGCTATGGTTTTCCTTCCTTGTGGTTTAGCAGCTGGT TCTTCCATTACAGTAATTGGAAAACCTCATTATGCACATCCAGAGTTTGTTCCACAACTTGCTAGATTGAGGCATGGGGATGGCATTGTGATGGTTTCTC AGTTTGTCATTGAATTGCAAGGATTGAAGGCAGTAGATGGGGAAGACCCTCCTAAGATTTTACATTTAAATCCTCGTTTGAAGGGAGATTGGAGTAGACG CCCAGTCATTGAACATAATACCTGCTATAGGATGCAGTGGGGGACAGCCCAGAGGTGTGATGGTTCTGGATCAAAGAAAGATGAAGATATGACGGTTGAT GGATATGTGAGATGTGAGAAATGGATGCGCCGTGATGCTGTCGACTCTAAAGAGTCGAAGACAACCTCATGGTTTAAGAGATTCATAGGGCGTGAACAGA AACCTGATGTAACCTGGCCGTTCCCTTTTGTGGAGGGAAGGCTGTTTATCTTGACGTTGAGGGCTGGCGTTGATGGCTACCACATCAATGTTGGGGGTCG ACATGTAACTTCATTTCCTTATCGGCCGGGATTTACTCTTGAAGATGCGACAGGGTTGGCCATAAAAGGAGATGTGGATATTCAGTCGGTTTATGCAACG TCTCTCCCTAACTCTCATCCAAGTTTCTCTCCACAAAGGGTTCTGGAAATGTCAGAGAAGTGGAAAGCACGTCCCATTTCGAAGAGTCCCATTTGGCTTT TCATTGGGATTTTGTCGGCAACAAATCACTTTGCAGAACGCATGGCCGTTCGAAAAACATGGATGCAATCATCATCAATCAAGTCCTCTAATGTAGTAGT TCGTTTCTTTGTTGCATTGAACCCGAGGAAAGAGGTGAATGCTGTGCTAAAGATGGAGGCTGATTACTTTGGTGATATTGTTATTTTACCATTTATGGAT CGCTACGAGCTTGTAGTTCTGAAGACGATTTCCATCTGCGAATTCGGAGTTAAGAATGTTTCAGCGGCATACATAATGAAATGTGACGATGACACATTTG TAAGGGTGGAGACAGTTCTGAAAGAGATTGGTCAAGTCTCCCGAAAGAAGTCTCTGTATATGGGGAACCTGAATCTTTTACACCGTCCTCTGAGAAATGG AAAATGGGCAGTCACTTTTGAGGAATGGCCAGAAGCAGTATATCCACCTTATGCAAATGGTCCGGGATATGTAATTTCTAGTGATATTGCAAATTTCATA GTCTCTCAACGCAGCAAGCGAATCCTCAGGCTTTTCAAGATGGAAGATGTGAGCATGGGAATGTGGGTTGAAAACTTCAATAGCACTACGGCCGTACACT ACTCTCACAGCTGGAAATTCTGTCAGTATGGATGTATGGAAGACTATTTCACAGCACATTACCAGTCGCCAAGGCAGATGATTTGCCTGTGGGATAAGTT GTCAAGAGGACGACCTCATTGCTGCAACTTTAGATGA
AA sequence Show only first row Show all	>Lus10036154 pacid=23141261 polypeptide=Lus10036154 locus=Lus10036154.g ID=Lus10036154.BGIv1.0 annot-version=v1.0 MKRLKVEPSSGRRFKLSHLLLGVAALYLVFLASKFHHFLEIAATLSGDETYFDTGGETGPESDLSKPLFSSAYMDTSNHQKLEDNQNEDAPNKAAMEEVK GGGSKPLKPIQHYGRITGEILRRLNRTSDMSSLERMADEAWTLGLKAWQEMGKYKGEDIGQTSSVLDGKPESCPLWLSMNGEELDRGDAMVFLPCGLAAG SSITVIGKPHYAHPEFVPQLARLRHGDGIVMVSQFVIELQGLKAVDGEDPPKILHLNPRLKGDWSRRPVIEHNTCYRMQWGTAQRCDGSGSKKDEDMTVD GYVRCEKWMRRDAVDSKESKTTSWFKRFIGREQKPDVTWPFPFVEGRLFILTLRAGVDGYHINVGGRHVTSFPYRPGFTLEDATGLAIKGDVDIQSVYAT SLPNSHPSFSPQRVLEMSEKWKARPISKSPIWLFIGILSATNHFAERMAVRKTWMQSSSIKSSNVVVRFFVALNPRKEVNAVLKMEADYFGDIVILPFMD RYELVVLKTISICEFGVKNVSAAYIMKCDDDTFVRVETVLKEIGQVSRKKSLYMGNLNLLHRPLRNGKWAVTFEEWPEAVYPPYANGPGYVISSDIANFI VSQRSKRILRLFKMEDVSMGMWVENFNSTTAVHYSHSWKFCQYGCMEDYFTAHYQSPRQMICLWDKLSRGRPHCCNFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	0	1
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	2.4	0.8356
AT2G26840			unknown protein		Lus10036059 [exp]	2.4	0.8420
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10015541 [exp]	3.2	0.8373
AT3G02710			ARM repeat superfamily protein...		Lus10010958 [exp]	5.0	0.8519
AT2G39670			Radical SAM superfamily protei...		Lus10000953 [exp]	6.0	0.8514
AT3G22520			unknown protein		Lus10006124 [exp]	6.6	0.8222
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10002285 [exp]	7.5	0.8319
AT3G08020			PHD finger family protein (.1)		Lus10016404 [exp]	8.5	0.8305
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	12.0	0.8302
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	13.1	0.8385

Compare expression of checked genes

Lus10036154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.