Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13840 490 / 3e-172 Polymerase/histidinol phosphatase-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003406 [exp] 0 / 1 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G206400 [exp] 571 / 0 AT2G13840 538 / 0.0 Polymerase/histidinol phosphatase-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0034 [flax] [poplar] Amidohydrolase PF02811 [flax] [poplar] PHP PHP domain
Representative CDS sequence Show only first row Show all	>Lus10036157 pacid=23141059 polypeptide=Lus10036157 locus=Lus10036157.g ID=Lus10036157.BGIv1.0 annot-version=v1.0 ATGGTCGATAATATTTCTATGCTAGAGTCTTGTTCAAACAACAATCCCATCAACAGTAATCATCATGGGAACATGACAAGTAAAAAGAGCCAGAAGAAGA ATAATAAGAAGAAGAAGAAGAAGAGCAAGAGTAAGATGACCGTGGAGCAGACTGTAGCGTTGAAGGCTGTGGCAGAGTGGGTGTATTTGGATCAGCAGCA ACAGCAGCATGCCTGCTTTGATGATTTCGGGGTCCAGAAAACCTTAGGGGACAAAATTGTCTTCGATTTACATTCTCATTCCAACCACAGTGATGGCTTC TTGTCCCCTTCTAAGCTCGTCGAGAGGGCTCATGGTAATGGGGTGAAAGTTGTTGCTCTCACAGATCATGATACCATGTCTGGGATCCCTGAAGCCATAG AAGCTGCTCAAAGATATGGCATCAAGATAATTCCCGGTGTTGAAATCAGCACCATATTCTCTCCAACTCCATGTGGGAATCATCAACTGGAAGAACCCGT CCATATTCTTGCATATTACAGCAGCTGCGGTCCAAAAAAGTTTGAGGAATTGGACAAGGTGTTGACCAATATAAGGAATGGGCGCTACCTACGTGCCAAA GACATGATCTTGAAACTTAATAAACTCAACCTGCCTCTCAAGTGGGAGCATGTTGCTAGAATTGCAGGCAAAGGTGTTGCCCCCGGTAGGCTGCATGTTG CCCGGGCTATGGTTGAAGCAGGCTATGTAGAAAACCTCAAACAGGCTTTCTCCAGATATCTATATGATGGCGGTCCTGCTTACTCAACGGGAAATGAGCC TCTGGTAGAGGAAGCAGTCCAACTTATACATGACACTGGAGGTATTTCAGTTCTGGCACATCCATGGGCATTAAAGGATCCAGTTGCAGTTGTTAGAAGG TTAAAGAATGCTGGCCTGCATGGGATGGAGGTTTTCCGAAGTGATGGTAGACTAGCTGTGTACAGCGATTTAGCAGATTCGTACGGTCTTCTAAAGCTTG GGGGATCTGATTTCCATGGGAAGGGGGGAAACAGGGAGTCAGAAGTGGGAAGTGTGAATCTCCCGGTAATGGTGCTGCAAGAGTTGCTGAAAGTTGCAAG GCCAATCTGGTGCAATGCCATAAGGGACATTCTTGAGAGGTATGCTGATGATCCAAGTGAATCAAACTTGGCAAGTGTAATGAGGTTTTGGAGAAGGAAG GAATTGAAAACTAGTGTTTCTGGAAAGGAGTTGATAGATGATTACTTATCCTTGTGGTTAACAGCGGAAGACAGACAGCTGAATGCTGCAGGGTTTGAAG CCATTAAGATCAAGCTATCATCGATAACCTAG
AA sequence Show only first row Show all	>Lus10036157 pacid=23141059 polypeptide=Lus10036157 locus=Lus10036157.g ID=Lus10036157.BGIv1.0 annot-version=v1.0 MVDNISMLESCSNNNPINSNHHGNMTSKKSQKKNNKKKKKKSKSKMTVEQTVALKAVAEWVYLDQQQQQHACFDDFGVQKTLGDKIVFDLHSHSNHSDGF LSPSKLVERAHGNGVKVVALTDHDTMSGIPEAIEAAQRYGIKIIPGVEISTIFSPTPCGNHQLEEPVHILAYYSSCGPKKFEELDKVLTNIRNGRYLRAK DMILKLNKLNLPLKWEHVARIAGKGVAPGRLHVARAMVEAGYVENLKQAFSRYLYDGGPAYSTGNEPLVEEAVQLIHDTGGISVLAHPWALKDPVAVVRR LKNAGLHGMEVFRSDGRLAVYSDLADSYGLLKLGGSDFHGKGGNRESEVGSVNLPVMVLQELLKVARPIWCNAIRDILERYADDPSESNLASVMRFWRRK ELKTSVSGKELIDDYLSLWLTAEDRQLNAAGFEAIKIKLSSIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G13840			Polymerase/histidinol phosphat...		Lus10036157 [exp]	0	1
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	20.9	0.7457
AT5G08450			unknown protein		Lus10004299 [exp]	40.8	0.7272
AT1G16810			unknown protein		Lus10033383 [exp]	42.5	0.7270
AT4G16710			glycosyltransferase family pro...		Lus10028587 [exp]	73.4	0.7127
AT3G08990			Yippee family putative zinc-bi...		Lus10035531 [exp]	235.4	0.6562

Compare expression of checked genes

Lus10036157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.