Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G36050 597 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 573 / 0 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 239 / 5e-75 Endoplasmic reticulum vesicle transporter protein (.1) AT4G27080 84 / 3e-17 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT1G50950 76 / 2e-14 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT3G20560 75 / 2e-14 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036449 [exp] 591 / 0 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10003406 [exp] 439 / 3e-152 AT1G36050 325 / 2e-109 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10041121 [exp] 345 / 3e-117 AT1G36050 382 / 8e-133 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10027795 [exp] 239 / 2e-75 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10023828 [exp] 181 / 8e-53 AT3G22290 478 / 5e-170 Endoplasmic reticulum vesicle transporter protein (.1) Lus10035503 [exp] 179 / 1e-51 AT3G22290 442 / 1e-155 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 160 / 1e-44 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10040029 [exp] 81 / 4e-16 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 79 / 1e-15 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G168800 [exp] 612 / 0 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.001G206100 [exp] 610 / 0 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 593 / 0 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.003G023500 [exp] 590 / 0 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.016G022800 [exp] 231 / 4e-72 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.006G023900 [exp] 229 / 2e-71 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.011G135500 [exp] 81 / 3e-16 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 75 / 2e-14 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07970 [flax] [poplar] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter
Representative CDS sequence Show only first row Show all	>Lus10036158 pacid=23141118 polypeptide=Lus10036158 locus=Lus10036158.g ID=Lus10036158.BGIv1.0 annot-version=v1.0 ATGGACGCGGTGGTACAAAAGCTCCGCAATTTGGACGCCTACCCGAAAATCAACGAGGATTTCTACAGCCGCACACTCTCCGGCGGCGTTATTACGCTCG TTTCTGCTATTGTCATGTTCCTCCTCTTCATATCTGAGTTCAGTTTGTATCTACATACTGTAACCGAGACCAAGCTTTTGGTGGATACAGCAAGGGGCGA AACCCTGCAGATCAATTTTGATGTAACCTTTCCTGTCATTCCGTGTTCGCTGCTCAGCCTTGATGCCATGGATATAAGTGGAGAAAAGCATTTTGATATT AGGCATGATATAACTAAAACCCGAATTAATTCTCACGGTCACGTTATTGAAGCCAAACAGAGCGGGATTGGTGCACCTACGATTGAGAAGCCCTTGCAGA AGCATGGTGGAAGACTTGAACATGGTGAAACTTATTGTGGTTCATGTTTTGGCGCAGAAACATCAGATGACCATTGCTGCAACTCGTGTGAAGAAGTTCA AGAAGCATACAGGAAAAAAGGTTGGGCACTTACAAACGCAGATATGATTGACCAGTGCAAAAGGGAAGGATTTATCCAGCAGGTGAATGAGGAAGTAGGT GAAGGATGCAATATTCATGGATCTTTGGAAGTGAACAAAGTAGCAGGGAATTTTCACTTTATACCGGGGAAAAGCTTCCATCAATCGAATATGTTTTTGC ACGATCTGTTGGCAATTGAGAAGGATACTTTTAATGTTAGTCATAGGATCAATTCACTTGCTTTTGGCAACTACTTTCCTGGCATCGTGAACCCCCTTGA CGGGGTTCAATGGATGCATGACTCTCCAAATGGAATGCATCAGTATTTCATCAAGGTTGTCCCAACGATATACACAAACACCAGGGGTCACACCATCCGC TCAAATCAGTATTCCGTGACGGAGCATATGAAGCATGTCGACTTTATCCGTGCAAACTCTTTCCCAGGAGTATTCTTCTTCTACGACTTGTCTCCAATCA AGGTTGTATATAAAGAAGAGCACATTTCCTTCTTACACTTCTTGACCAACATCTGCGCAGTAATTGGAGGTATTTTCACGGTGGCGGGGATCGTGGATTC ATTTGTTTATCATGTTAAAGACGATAATAATAATTATGGAAGAAGGCCTAACCCTCACTGTGATCCTTGCAAGGCTACGATTGGTTACATGGAAGAAGAG CTAAGGAAGGTGTTGAACAATTTGGACCATTCTGCTCGATCGCTTCTTGTGTTGCTCAACACGATCTTCAGACTCCAAATCCTTGAGCATCTGCTGTGCT GTCTTGTAAGCCTTGGGTTGCGAATCAACGCCTCCCACCTTGCTTACTAA
AA sequence Show only first row Show all	>Lus10036158 pacid=23141118 polypeptide=Lus10036158 locus=Lus10036158.g ID=Lus10036158.BGIv1.0 annot-version=v1.0 MDAVVQKLRNLDAYPKINEDFYSRTLSGGVITLVSAIVMFLLFISEFSLYLHTVTETKLLVDTARGETLQINFDVTFPVIPCSLLSLDAMDISGEKHFDI RHDITKTRINSHGHVIEAKQSGIGAPTIEKPLQKHGGRLEHGETYCGSCFGAETSDDHCCNSCEEVQEAYRKKGWALTNADMIDQCKREGFIQQVNEEVG EGCNIHGSLEVNKVAGNFHFIPGKSFHQSNMFLHDLLAIEKDTFNVSHRINSLAFGNYFPGIVNPLDGVQWMHDSPNGMHQYFIKVVPTIYTNTRGHTIR SNQYSVTEHMKHVDFIRANSFPGVFFFYDLSPIKVVYKEEHISFLHFLTNICAVIGGIFTVAGIVDSFVYHVKDDNNNYGRRPNPHCDPCKATIGYMEEE LRKVLNNLDHSARSLLVLLNTIFRLQILEHLLCCLVSLGLRINASHLAY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036158 [exp]	0	1
AT1G02330			unknown protein		Lus10026267 [exp]	3.5	0.8454
AT3G02065			P-loop containing nucleoside t...		Lus10008509 [exp]	8.7	0.8279
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10000451 [exp]	12.2	0.8521
AT5G38720			unknown protein		Lus10023232 [exp]	12.9	0.8469
AT1G12910		LWD1, ATAN11	LIGHT-REGULATED WD 1, ANTHOCYA...		Lus10012593 [exp]	27.7	0.8406
AT4G18260			Cytochrome b561/ferric reducta...		Lus10028131 [exp]	29.0	0.8186
AT4G02600		MLO1, ATMLO1	MILDEW RESISTANCE LOCUS O 1, S...		Lus10027093 [exp]	31.3	0.8357
AT3G59990		MAP2B	methionine aminopeptidase 2B (...		Lus10005292 [exp]	32.7	0.8346
AT3G52230			unknown protein		Lus10028838 [exp]	35.5	0.8361
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	37.3	0.8124

Compare expression of checked genes

Lus10036158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.