Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09430 307 / 9e-106 alpha/beta-Hydrolases superfamily protein (.1) AT4G39955 225 / 2e-73 alpha/beta-Hydrolases superfamily protein (.1) AT1G78210 211 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) AT5G21950 125 / 6e-35 alpha/beta-Hydrolases superfamily protein (.1) AT1G17430 113 / 6e-30 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 107 / 4e-28 alpha/beta-Hydrolases superfamily protein (.1) AT2G18360 106 / 2e-27 alpha/beta-Hydrolases superfamily protein (.1) AT4G36610 95 / 3e-23 alpha/beta-Hydrolases superfamily protein (.1) AT1G72620 94 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1) AT1G13820 49 / 6e-07 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023147 [exp] 255 / 3e-85 AT4G39955 414 / 3e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10000630 [exp] 222 / 2e-72 AT4G39955 386 / 2e-135 alpha/beta-Hydrolases superfamily protein (.1) Lus10020926 [exp] 221 / 1e-71 AT1G78210 358 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10033451 [exp] 200 / 2e-64 AT5G09430 209 / 2e-70 alpha/beta-Hydrolases superfamily protein (.1) Lus10019631 [exp] 122 / 2e-33 AT1G72620 270 / 3e-89 alpha/beta-Hydrolases superfamily protein (.1) Lus10012409 [exp] 118 / 7e-32 AT1G17430 259 / 1e-84 alpha/beta-Hydrolases superfamily protein (.1) Lus10038076 [exp] 115 / 4e-31 AT4G33180 333 / 8e-115 alpha/beta-Hydrolases superfamily protein (.1) Lus10022106 [exp] 103 / 3e-26 AT1G72620 264 / 4e-87 alpha/beta-Hydrolases superfamily protein (.1) Lus10041747 [exp] 89 / 1e-20 AT2G18360 436 / 1e-154 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G313100 [exp] 322 / 2e-111 AT5G09430 466 / 7e-167 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G097400 [exp] 251 / 1e-83 AT1G78210 407 / 1e-143 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G094700 [exp] 234 / 5e-77 AT4G39955 400 / 1e-140 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G074066 [exp] 227 / 3e-74 AT4G39955 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G219400 [exp] 128 / 5e-36 AT4G33180 329 / 3e-113 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G168600 [exp] 107 / 2e-27 AT1G17430 282 / 1e-93 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155700 [exp] 95 / 3e-23 AT2G18360 317 / 4e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G155800 [exp] 94 / 7e-23 AT2G18360 340 / 3e-117 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G024400 [exp] 92 / 3e-22 AT2G18360 452 / 2e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G117100 [exp] 92 / 3e-22 AT2G18360 304 / 4e-103 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036159 pacid=23141032 polypeptide=Lus10036159 locus=Lus10036159.g ID=Lus10036159.BGIv1.0 annot-version=v1.0 ATGAGGTTGATGAGGGCACACGGTGTCGAGAGGACTAGCCTTGTCGGGATAAGTTACGGTGGTTTCGTAGGATACAGTATGGCTGCTCAATTTCCAGGCG CAATAGAGAGGATTGTACTATGCTGCGCTGGGGTTTGTTTGGAAGAGAAAGATATGGAGAATGGTTTGTTTAAGGTTAGGAATTTAGATGAGGCCGCCAG CATTTTGATGCCACAGACTCCTGACAAGTTGAAGGAATTGATGCGCTTTTCTTTTGTTAAGCCTGCTACTGGTGTTCCTACTTACTTCCTCTCAGATTTC ATTGACGTTATGTGTACTGATTATGTAGAGGAGAAGACAGAGCTAATTCGAGCCATACTTCGAGGTCGAAACCTCTCCGACCTACCGCGTCTTTCACTTA TCAAAACACTCATTATATGGGGAGACCAAGATCAAATATTCCCCATAGAACTTGCACACAGATTGAAAAGGCATATCGGAGAAAGTGCAGAGTTGGTAAT AATAAAGAACGCCGGGCATGCAGTAAACCTGGAAAAGTCGAAAGAATTCTGCAAACATTTGAGGACCTTTCTAATTAATAATGACCATGATCCTGAACCC CCAGGGCATCGACCCCTAGATACTACGCATGTAGAGCATTACTGA
AA sequence Show only first row Show all	>Lus10036159 pacid=23141032 polypeptide=Lus10036159 locus=Lus10036159.g ID=Lus10036159.BGIv1.0 annot-version=v1.0 MRLMRAHGVERTSLVGISYGGFVGYSMAAQFPGAIERIVLCCAGVCLEEKDMENGLFKVRNLDEAASILMPQTPDKLKELMRFSFVKPATGVPTYFLSDF IDVMCTDYVEEKTELIRAILRGRNLSDLPRLSLIKTLIIWGDQDQIFPIELAHRLKRHIGESAELVIIKNAGHAVNLEKSKEFCKHLRTFLINNDHDPEP PGHRPLDTTHVEHY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09430			alpha/beta-Hydrolases superfam...		Lus10036159 [exp]	0	1

Compare expression of checked genes

Lus10036159 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.