Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33520 122 / 1e-34 AtHMAC6, HMA6, PAA1 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) AT5G21930 54 / 2e-08 ATHMA8, HMA8, PAA2 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003403 [exp] 187 / 2e-60 AT4G33520 112 / 8e-31 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10023777 [exp] 124 / 1e-32 AT4G33520 1180 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Lus10038070 [exp] 54 / 3e-08 AT5G21930 1146 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G205400 [exp] 127 / 6e-34 AT4G33520 1066 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.003G024000 [exp] 116 / 4e-30 AT4G33520 1078 / 0.0 Arabidopsis thaliana heavy metal ATPase 6, P-type ATP-ase 1 (.1.2.3) Potri.018G047800 [exp] 58 / 9e-10 AT5G21930 1193 / 0.0 ARABIDOPSIS HEAVY METAL ATPASE 8, P-type ATPase of Arabidopsis 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10036161 pacid=23141158 polypeptide=Lus10036161 locus=Lus10036161.g ID=Lus10036161.BGIv1.0 annot-version=v1.0 ATGGAGGCTTGTTCCGCACCAACCACTCTATCCCTCTTCACAATCTCCAAATCCCTAAATAATCTCAACACCCGTCCACTTCTGAGGACATATCCCGTTG GGTACAGCAAGTCTTGTTTCCTTTCTTCTGCTAGTGAACCTCCTGGGAAGCGGTTAGCCTTATCCTTGTCGCATCGCCACTGCTTTCCTAAATCGGCTGA ATCTGGCGGAGGCGGTGGTGGTGATGAGGGCAGCGACGCCGGTGAGGGTGGCTGCGGAGGATCGGACGGTGGAGATGTGAAACCTGGTGGTGGAGTGGAG GAGGGCTCAACATTGTCGTCGGATGTTATCATACTTCATGTTGGACCCTTGGGGGATGTCCATTTGTTGGTGGAGCAGGGGATGACATGTGGAGGATGTG TAGCCAGCGTCAAGAAGATACTGGAAAGCCAACCACAAGTGTCTTGTGCAAATGTGGATCTTTCAACGGAGACAGCAACAGTGTGGGTTGTCTCTGAAGC AAAAGCAGTCCCGGACTGGCAAAAGCAACTTGGTGATGCACTTGCTAAGCACCTCACTAGTTGTGGTTTCACATCAAACCCTCGAGGTGCGCAGGAAGCT GTTGAAGGAGATGCTTAG
AA sequence Show only first row Show all	>Lus10036161 pacid=23141158 polypeptide=Lus10036161 locus=Lus10036161.g ID=Lus10036161.BGIv1.0 annot-version=v1.0 MEACSAPTTLSLFTISKSLNNLNTRPLLRTYPVGYSKSCFLSSASEPPGKRLALSLSHRHCFPKSAESGGGGGGDEGSDAGEGGCGGSDGGDVKPGGGVE EGSTLSSDVIILHVGPLGDVHLLVEQGMTCGGCVASVKKILESQPQVSCANVDLSTETATVWVVSEAKAVPDWQKQLGDALAKHLTSCGFTSNPRGAQEA VEGDA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10036161 [exp]	0	1
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10040081 [exp]	4.7	0.8817
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	9.5	0.8880
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	15.2	0.8736
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10036892 [exp]	15.7	0.8643
AT3G25480			Rhodanese/Cell cycle control p...		Lus10005853 [exp]	26.6	0.8713
AT5G27390			Mog1/PsbP/DUF1795-like photosy...		Lus10015165 [exp]	34.3	0.8472
AT1G64355			unknown protein		Lus10001903 [exp]	34.6	0.8389
AT5G37360			unknown protein		Lus10004762 [exp]	43.9	0.8484
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	49.6	0.8441
AT3G53850			Uncharacterised protein family...		Lus10010881 [exp]	56.1	0.7643

Compare expression of checked genes

Lus10036161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.