Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64220 769 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 733 / 0 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT5G21990 640 / 0 OEP61, TPR7 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22300 546 / 5e-173 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT1G67310 332 / 3e-95 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT4G16150 277 / 2e-77 CAMTA calmodulin binding;transcription regulators (.1) AT3G16940 275 / 3e-77 CAMTA calmodulin binding;transcription regulators (.1) AT1G58450 79 / 2e-16 TPR6 tetratricopeptide repeat 6, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25230 81 / 3e-15 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT5G48570 81 / 4e-15 ROF2, ATFKBP65 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003405 [exp] 1640 / 0 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10019379 [exp] 941 / 0 AT5G21990 658 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041704 [exp] 564 / 4e-180 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 546 / 1e-173 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10003119 [exp] 363 / 4e-107 AT1G67310 640 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10011352 [exp] 359 / 3e-104 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10016873 [exp] 292 / 1e-82 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 291 / 6e-82 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 264 / 7e-73 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G190600 [exp] 717 / 0 AT5G21990 693 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G151700 [exp] 689 / 0 AT5G21990 700 / 0.0 tetratricopeptide repeat 7, outer envelope protein 61, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G075100 [exp] 645 / 0 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 642 / 0 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 474 / 2e-146 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.003G170600 [exp] 360 / 2e-105 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.001G057800 [exp] 348 / 3e-101 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.010G141700 [exp] 297 / 5e-84 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 293 / 9e-83 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 102 / 4e-26 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10036162 pacid=23141074 polypeptide=Lus10036162 locus=Lus10036162.g ID=Lus10036162.BGIv1.0 annot-version=v1.0 ATGTTTAACGGGATGATGGATCCTGAGCTGATCAAGCTCGCTCAGGAGCAGATGAGTCGGATGTCCCCTGACGAATTGGCCAAGATCCAACAGCAGATGA TGTCGAATCCAGATTTGATGAAAATGGCCTCTGAAAGCATGAAGAACATGAGGCCAGATGACTTGAAGCAGGCGGCAGAGCAGTTGAAGTATACACGTCC GGACGAGATGGCTGAGATTGGTGAGAAGATGGCTAATGCATCACCTGAAGAGATAGCAGCTATGCGTGCCCGGCTTGATTCTCAGGTCACTTATGAAATG AATGCTGCTGAAATGTTGAAAAAACAGGGTAATCTGCTTCACAGTGAGGGAAAATACAGCGAGGCATTACAAAAATATCTGCATGCAAAAAGGAACCTCA AAGGAATTCCATCCTCCAAAGGCAAGGCCCTTTTATTAGCGTGTTCTCTCAATCTAATGTCCTGTTACTTGAAGACAAAACAGTACAACGAGTGCATACA AGAAGGGACAGAGGTGCTAAAATACGAGGCTAAGAACCTCAAAGCTCTTTATCGTAGGGGTCAAGCCTACAAGGAACTTGGACTGTTGCAGGATGCTATT TTTGATCTGGCTAAAGCACATGAAATGTCACCTGATGATGAGACCGTTGCTTCTGTCTTAAGGAATGCCGAGGAAAGATTTGCTGAAGAGGGTAGTCATC ATGCACCCAAGGGAGTAGTAATTGAAGAGATAACTGAACATGCATCTTCCGAAAATCATGACCATCCTTCACAGGAAAGCATGAGTGTTTCAAATACTAA TCTTGGGGGTTCCATGACCAGTTCAGAGTCTTTACACTCGTTGAAAGACGACCCACAAGCTGTAAGAACGTTCCAGAATTTTATTTCCAATGCTGATGCT GAAACGTTGGCAGCATTAAGCGGTGGGAAAGCTGGTGATATTTCTCCTGATATGTTTAAGACTGCTACAAATATGATCGGAAAAATGTCGCCCGAGGAGC TCCAGAAAATGCTTCAGATGGCATCTTCTTTTCAGAGGGGAAATCCATTCAGTAATGGTGTTGATAGTATCGGATCTGGTTCTGTTCCTCCAACCATGAG TCCGGACATGATTAAAACCGCTTCTGAAATGATGGGAAAAATGCCCCCAGAAGAGCTTCAAAAAATGTTTGAAATGGCATCCTCTCTAAGAGGGAAAAGT GCTGTTGCAACAGGAGGAATCTCTGATCAACATGGACTAGATTCATGCCAAACTTCAAAGTCTGCAGAACCTTGGGAAAATATTTCTGCAGATGGCAGTA GAAGTGGTGACCCGAGTTCATCTAGCAGCTTCTTTTCAAGGTCAATGAGTTCTGATCAATCAAGTTTTTCAAGCTCGGCTGGTGATCTGCAGGAACAGTT GAGAAACCAAATGAATGCTCCAGCAACACGGCAGATGTTCAGTTCAATGATGAAAAACATGAGCCCTGAGATGGTCGCTAACATGAGCAAGCAGTTTGGA GTTCAGCTTTCTCCAGAAGATGCTGCAAAAGCTCAGCAAGCCATGTCATCTCTTTCCCCAGAGGACTTGGACAAAATGATGCGATGGATGGATAGGCTCC AAAAAGGAGCTGCAGGTGCAAAGAAGGCAAAGAACTGGTTACTTGGGAAACCTGGTCTGATCATGGCTGTATGCATGCTTCTTTTAGCAATGCTACTTCA TTGGCTTGGTTTCATCGGAAGTTTTATGAATAAAGCCAAGCCAATGTGGATAGATTTGCATTCTTACTCCCTTCACACTGGTAACAGGACACACAGCAGC CCATCAAACAGCCTCGTAAATCACAACAGATCTGGGAATACTGATTCGGTTAGTCCATCAAGTACCCTTTCATCTGCATTTGAAGATGCCGATTCAGCTG ATAGCCATCAAACAACTGGGACCCACTCATTCTACAGGCCACAACCACTGCAGAATAATGTTACTATCGACAAAGTGGATGTTGGTCCATCAAGTACTCA TCTGTCACACTCTCGTGCAGGTCCTGGAAGTCCCGTTGCATACGGTCATGGGAGTGGATCTGGAATTAATGATAGTAGTTCCAACATAATCAATTCACAG GGTTTAGCATCCTGGGAAGATGTTTATGAACAATCTACAAGAGGTTTTGATAACACACCATTGCGTGCAGCAATAAATTCCACACACCTGGGTAATTATG GTGTTGGGGCAAATATGATGCAGCCGGCCCCCACTGGGAGTGCCACCCAAGTTAACTTCGATGGCTCTTTGCCAATTCATTCAACTTGGCAGATTCCTGC CGGTGATAGTTCGTTGCACTTTCCGCATGGGATGGACGCAACATCAGATTTGGATCTGGCATACGATTTTGGCACGAGGTTATTTGATCAGAGAACACAG GATTTTGGCACGCATAACACGTTGGAGCCATACTTTACTGGGTCCCTTCAGCAACATGACCAACTTTTACATAACAACCTCCACATAGAGCTCCTAAATT CAGAACTGCAGTATGCTACAGGCTCATATCTCCCAGTTGAAGGAGCTGCAGAAGGAAATGGAAGATATGCCTTATTTGCAAAGAAACCCTTGTTGGGTGA AGAAGGCTTGAAGAAAGTTGATAGCTTTTCTCGATGGGTTAGTAAGGAACTTGGAGAAGTGGATGATTTAAATATGAAGTCCTCATCTGGCATTGCATGG AGCAACGTTGAATGTGGAAATGTAGCTGATGAGTCGGTTTTGAGTCCCTCTTTGTCACAAGACCAGCTTTTCAGCATAATGGATTTTTCACCTAAGTGGG CGTATGCAGACTCAGGGACAGAGGTTCACATCGTTGGAATGTTCTTGAAGAGTCAAGAAGAGGTCCAAAAGTGCGAATGGTCTTGCATGTTCGGAGAAGT AGAAGTTCGAGCTGAGGTTTTGGCTGATGGGGTTCTTTGTTGCTTTGCTCCACCTCATGGTTTTGCCAGGGTTCCACTTTATGTTACATGTTCGAATAGG GTGGCTTGCAGTGAAGTGCGAGAATTTGATTATCTTGTTAACTCAGTAGGAGATGTCAATGTTAGAGATGTATATGGAGGTAATACTCCTGAAATGTGGC TTCATCTACGACTTGAGAAGTTGTTGTCAGTCAAAACTTCCACAGGGATGAGTCATACCCTTGATGTTGCTCGAGCAAAACAGAAGTTAGTTCGAAAAAT CTTGTTGCTGAAGGAGGAAGATGACAATCACCAAATGACAGAGCCAACCTCTGAAGAAAGTTTGTCTCATGTTGAAGTTAAAAGCAAACTTCTATACAAG CTTATTAAAGAAAAGCTGTATGCATGGCTTCTTCATAAGGTACTAGAGAGTGGCAAGGGACCATGTGTCTTGGATGATGATGGGCAAGGTGTCCTACATT TAGCTGCTGCGCTTGGTTGGGACTGGGCCATAAAGCCAACTGTGGCTGCTGGAGTGAGCATCAATTTCCGTGATGTAAATGGATGGACTGCCCTTCATTG GGCTGCTTACTGTGGCAGGGAGCAGACAGTTGCAGTCCTTGTATCATGGCGTGCTGCTCCTGGGGCATTGACAGATCCATCTCCTGAATTCCCGTCTGGT AGAACTGCAGCTGAACTTGCCTCTGGGAACGGACACAAAGGCATCTCTGGCTTTCTTGCGGAGTCATTTTTGACCAGCTACCTATCAACCCTAACAGTGA AAGAGCAGAAGGAAGATGGGGAAAATGTTGTGCAGACAATTGAAGAGCGAACAGCGACTCCATTGAATGGAAATGATGTTCCAGATGCATTGTCACTAAA GGATTCACTTACTGCTATACGTAACGCTACGCAAGCTGCTAATAGGATATATCAAGTATTCAGGATGCAGTCTTTCCAGCGAAAACAATTGAGTGAAGAG CATGAGAGTGATGAATTTGGTTTGTCAGATGAGCACGCCCTATCTCTTCTAGCAGGGAATTCTCGCAGACCAGTGTACTCGAATGGAAAGGCTCATGCTG CTGCGACCCAAATCCAAAAGAAATTCCGTGGTTGGAAGAAGAGGAAGGAATTTCTGATTATCAGGCAGAGAATTGTTAAAATCCAGGCACATATTAGAGG ACATCAGGTGAGGAAACAGTATAAAACAGTGGTTTGGTCAGTGGGAATATTGGAGAAGATAATATTGAGGTGGAGACGTAAAGGAAGTGGGTTGCGTGGA TTCCGAAGGGATGCAATGGTAGAGGATTCCTCCAGTCCACAAAATGTGCATCCAAAGGAGGATGACGACTACGATTATCTCAAGGAAGGAAGGAAACAGA ATGAAGAAAGGGTAGAAAAAACACTAAACAGGGTCAAATCCATGTTTCATGATCCCAACGGACGAGCTCAATACAGAAGGCTTCTTACTGTCGTTGAAGG ACTCAGGGAAAACCAGGCATGTAGTAGCATTCTTAACAACCCTCAAGACGAAACGGAAGAAGGCCAAGGCGAAGAGAGTTCCAAACAACTATTAGATTTC GACTCGCTTTTGGACGATGATACTTTCATGTCACTAGCATTCGACTAA
AA sequence Show only first row Show all	>Lus10036162 pacid=23141074 polypeptide=Lus10036162 locus=Lus10036162.g ID=Lus10036162.BGIv1.0 annot-version=v1.0 MFNGMMDPELIKLAQEQMSRMSPDELAKIQQQMMSNPDLMKMASESMKNMRPDDLKQAAEQLKYTRPDEMAEIGEKMANASPEEIAAMRARLDSQVTYEM NAAEMLKKQGNLLHSEGKYSEALQKYLHAKRNLKGIPSSKGKALLLACSLNLMSCYLKTKQYNECIQEGTEVLKYEAKNLKALYRRGQAYKELGLLQDAI FDLAKAHEMSPDDETVASVLRNAEERFAEEGSHHAPKGVVIEEITEHASSENHDHPSQESMSVSNTNLGGSMTSSESLHSLKDDPQAVRTFQNFISNADA ETLAALSGGKAGDISPDMFKTATNMIGKMSPEELQKMLQMASSFQRGNPFSNGVDSIGSGSVPPTMSPDMIKTASEMMGKMPPEELQKMFEMASSLRGKS AVATGGISDQHGLDSCQTSKSAEPWENISADGSRSGDPSSSSSFFSRSMSSDQSSFSSSAGDLQEQLRNQMNAPATRQMFSSMMKNMSPEMVANMSKQFG VQLSPEDAAKAQQAMSSLSPEDLDKMMRWMDRLQKGAAGAKKAKNWLLGKPGLIMAVCMLLLAMLLHWLGFIGSFMNKAKPMWIDLHSYSLHTGNRTHSS PSNSLVNHNRSGNTDSVSPSSTLSSAFEDADSADSHQTTGTHSFYRPQPLQNNVTIDKVDVGPSSTHLSHSRAGPGSPVAYGHGSGSGINDSSSNIINSQ GLASWEDVYEQSTRGFDNTPLRAAINSTHLGNYGVGANMMQPAPTGSATQVNFDGSLPIHSTWQIPAGDSSLHFPHGMDATSDLDLAYDFGTRLFDQRTQ DFGTHNTLEPYFTGSLQQHDQLLHNNLHIELLNSELQYATGSYLPVEGAAEGNGRYALFAKKPLLGEEGLKKVDSFSRWVSKELGEVDDLNMKSSSGIAW SNVECGNVADESVLSPSLSQDQLFSIMDFSPKWAYADSGTEVHIVGMFLKSQEEVQKCEWSCMFGEVEVRAEVLADGVLCCFAPPHGFARVPLYVTCSNR VACSEVREFDYLVNSVGDVNVRDVYGGNTPEMWLHLRLEKLLSVKTSTGMSHTLDVARAKQKLVRKILLLKEEDDNHQMTEPTSEESLSHVEVKSKLLYK LIKEKLYAWLLHKVLESGKGPCVLDDDGQGVLHLAAALGWDWAIKPTVAAGVSINFRDVNGWTALHWAAYCGREQTVAVLVSWRAAPGALTDPSPEFPSG RTAAELASGNGHKGISGFLAESFLTSYLSTLTVKEQKEDGENVVQTIEERTATPLNGNDVPDALSLKDSLTAIRNATQAANRIYQVFRMQSFQRKQLSEE HESDEFGLSDEHALSLLAGNSRRPVYSNGKAHAAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHIRGHQVRKQYKTVVWSVGILEKIILRWRRKGSGLRG FRRDAMVEDSSSPQNVHPKEDDDYDYLKEGRKQNEERVEKTLNRVKSMFHDPNGRAQYRRLLTVVEGLRENQACSSILNNPQDETEEGQGEESSKQLLDF DSLLDDDTFMSLAFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10036162 [exp]	0	1
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	1.7	0.8904
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	2.2	0.9147
AT1G71240			Plant protein of unknown funct...		Lus10002408 [exp]	2.4	0.9088
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10009324 [exp]	3.9	0.8799
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	4.9	0.8811
AT2G28320			Pleckstrin homology (PH) and l...		Lus10016094 [exp]	6.0	0.8549
AT4G19670			RING/U-box superfamily protein...		Lus10036202 [exp]	6.9	0.8650
AT5G15640			Mitochondrial substrate carrie...		Lus10012597 [exp]	7.5	0.8310
AT5G06140		ATSNX1	ARABIDOPSIS THALIANA SORTING N...		Lus10016994 [exp]	9.3	0.8138
AT3G16090		AtHrd1A	homolog of yeast Hrd1, RING/U-...		Lus10023477 [exp]	10.6	0.8315

Compare expression of checked genes

Lus10036162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.