Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01080 268 / 1e-89 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005728 [exp] 293 / 7e-97 AT2G01080 213 / 4e-67 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 46 / 2e-05 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007364 [exp] 43 / 0.0002 AT1G65690 267 / 6e-90 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003238 [exp] 42 / 0.0004 AT3G54200 143 / 3e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10035612 [exp] 42 / 0.0005 AT3G54200 142 / 8e-42 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10036403 [exp] 40 / 0.001 AT2G46150 156 / 8e-48 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208000 [exp] 293 / 2e-99 AT2G01080 241 / 2e-80 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G021934 [exp] 290 / 2e-98 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G163800 [exp] 74 / 3e-15 AT2G01080 55 / 6e-09 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10036163 pacid=23141040 polypeptide=Lus10036163 locus=Lus10036163.g ID=Lus10036163.BGIv1.0 annot-version=v1.0 ATGTCTGCAAGTCAAGAAGATAGTATTAGGAAAGGGGAATCTGTGCAATTAAGTGCTGAGAAAGCACTGTTGACTGCTGACAACCAAACAAAACCAGTAC ATCCCAAGGGAGGGGGGCAAGGGGGAGACAGCGCACCAAGAAAGCAGGCACCTCACATTCCCGCCAATCACCAGCTCAACGGCGGCCCAAAACAACCGCA GCTGGCTGCAGTAGCAGTTGAAGCTCCACCTCCTGTGTCTCCAACACCACCGCTTGTTCCTCCTCCTCTTCCTCCTCCTCCAACTACCACCCAGCATCAA CACATCCACGGCGGAGGGCACCACTATCGGCACCAGAACCACCCACAGTACAACCCATACTACCCATCCTCATCCACATCTTCAAAAGCATCCCTGAAGG GGTGCTGCTGTTGCCTGCTACTCCTCTTGTCTTTCCTTTTACTCCTTGCCCTGGCAATCGCCCTAGTGGTGATCCTCGCTGTGAAGCCCAAGAAGCCCCA ATTCGACCTGCAGCAAGTTGGAGTTCAGTACATGGGAATCAACACACCAACCCCTTCCTCCTTGGACCCGGCGACGGCATCACTGTCCCTCACGATCCGG ATGCTATTCACCGCCGTGAACCCTAATAAAGTTGGGATCAAGTACGGGGAGTCGAGGTTCACGGTGATGTACAGAGGGATTCCGTTGGGGAAGGCGTCGG TGGCCGGATTCTTCCAGGAAGCTCACAGTGAGAGGCAGGTGGTGGCGACGGTGTCTGTGGATCGATACAGCTTGATGCAGGCAGACGCCGCGGATTTGGT GAGGGATGCATCTTTGAACGACCGGGTAGAGCTCAGGGTCCTGGGTGAAGTCGGGGCCAAGATCCGAGTTATGGACTTGGATTCACCTGGTGTTCAGGTA TCGGTGGATTGTGCAATTGTAATCAGCCCAAGGAAGCAATCTCTTACCTACAAACAATGTGGATTTGATGGACTAAGCGTCTAA
AA sequence Show only first row Show all	>Lus10036163 pacid=23141040 polypeptide=Lus10036163 locus=Lus10036163.g ID=Lus10036163.BGIv1.0 annot-version=v1.0 MSASQEDSIRKGESVQLSAEKALLTADNQTKPVHPKGGGQGGDSAPRKQAPHIPANHQLNGGPKQPQLAAVAVEAPPPVSPTPPLVPPPLPPPPTTTQHQ HIHGGGHHYRHQNHPQYNPYYPSSSTSSKASLKGCCCCLLLLLSFLLLLALAIALVVILAVKPKKPQFDLQQVGVQYMGINTPTPSSLDPATASLSLTIR MLFTAVNPNKVGIKYGESRFTVMYRGIPLGKASVAGFFQEAHSERQVVATVSVDRYSLMQADAADLVRDASLNDRVELRVLGEVGAKIRVMDLDSPGVQV SVDCAIVISPRKQSLTYKQCGFDGLSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01080			Late embryogenesis abundant (L...		Lus10036163 [exp]	0	1
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10039538 [exp]	1.0	0.8910
AT3G11320			Nucleotide-sugar transporter f...		Lus10009878 [exp]	4.9	0.8075
AT3G01720			unknown protein		Lus10014878 [exp]	5.8	0.7542
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10037212 [exp]	6.0	0.7621
					Lus10008758 [exp]	8.1	0.7484
AT2G32440		ATKAO2, CYP88A4...	ARABIDOPSIS ENT-KAURENOIC ACID...		Lus10000026 [exp]	8.4	0.7657
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	10.2	0.8437
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	11.0	0.7141
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Lus10007444 [exp]	12.6	0.7500
AT1G02270			Calcium-binding endonuclease/e...		Lus10010095 [exp]	14.5	0.7242

Compare expression of checked genes

Lus10036163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.