Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14110 284 / 7e-99 FUS7, EMB143, CSN8, COP9 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005729 [exp] 389 / 3e-140 AT4G14110 275 / 4e-95 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G207900 [exp] 312 / 7e-110 AT4G14110 299 / 2e-104 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1) Potri.003G022001 [exp] 114 / 2e-33 AT4G14110 111 / 2e-32 FUSCA 7, EMBRYO DEFECTIVE 143, COP9 SIGNALOSOME SUBUNIT 8, CONSTITUTIVE PHOTOMORPHOGENIC 9, COP9 signalosome, subunit CSN8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF10075 [flax] [poplar] CSN8_PSD8_EIF3K CSN8/PSMD8/EIF3K family
Representative CDS sequence Show only first row Show all	>Lus10036164 pacid=23141272 polypeptide=Lus10036164 locus=Lus10036164.g ID=Lus10036164.BGIv1.0 annot-version=v1.0 ATGGATTTCACTCCTCTCAGCAACGCCCTAGGATCTAAATCATATGGAAATATTGCTGATATCTGCGATGAACTCATGCTCAAGGCAGCAGCTGAAGGAG TTCCCTTCCAGGATGACTGGCCCTATGCGATTCATCTTCTCGGTTATATTTACCTTAATGATGTTAACAGTGCACGTTTTCTGTGGAAAACAATCCCTTC AGCGGTGAAAGATAGCCAGCCTGAAGTGGTTTCTGTTTGGGCAATTGGTCAGAAACTGTGGACACATGCCTACCCGGATGTGCACGAGGCTGTGCGCAGT TTTGATTGGAGCGAACAAACTCGCCCCCTTGTTGTTGCTTTTGCTGAACTTTATAGCAAGAGTATGTTTGAGTTGTTGTTATCAGCTTATTCAACCATTA GCGTCAAAGACACTGCTCTCTTTTTGGGGATGAATGAGGAAGATGCCACAAATTATGTAGTGCAACAAGGATGGAGTCTTGATTCGGATTCTCAGATGCT GACTGTGAAGAAGCAACCTGCTGCAATGGAGCAGAAACGGGATCCGAGTAAATTACAGCGCTTGACAGAGTATGTGTTCCACCTTGAGCACTAA
AA sequence Show only first row Show all	>Lus10036164 pacid=23141272 polypeptide=Lus10036164 locus=Lus10036164.g ID=Lus10036164.BGIv1.0 annot-version=v1.0 MDFTPLSNALGSKSYGNIADICDELMLKAAAEGVPFQDDWPYAIHLLGYIYLNDVNSARFLWKTIPSAVKDSQPEVVSVWAIGQKLWTHAYPDVHEAVRS FDWSEQTRPLVVAFAELYSKSMFELLLSAYSTISVKDTALFLGMNEEDATNYVVQQGWSLDSDSQMLTVKKQPAAMEQKRDPSKLQRLTEYVFHLEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10036164 [exp]	0	1
AT3G26090		ATRGS1, RGS1	REGULATOR OF G-PROTEIN SIGNALI...		Lus10011395 [exp]	1.7	0.9158
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	2.0	0.9156
AT4G14110		FUS7, EMB143, C...	FUSCA 7, EMBRYO DEFECTIVE 143,...		Lus10005729 [exp]	3.2	0.9047
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	6.5	0.9099
AT4G34660			SH3 domain-containing protein ...		Lus10017500 [exp]	7.2	0.8851
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10021909 [exp]	9.2	0.9070
AT2G26990		COP12, ATCSN2, ...	FUSCA 12, CONSTITUTIVE PHOTOMO...		Lus10037417 [exp]	10.2	0.9053
AT5G54850			unknown protein		Lus10011150 [exp]	10.5	0.9127
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	16.1	0.9101
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	18.0	0.9123

Compare expression of checked genes

Lus10036164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.