Plant FIBer expression Database

Lus10036165 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10005731
[exp]
425 / 2e-151 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G176900
[exp]
79 / 5e-17 AT1G66810 48 / 4e-06 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Potri.002G084750
[exp]
61 / 2e-10 ND /
PFAM info
Representative CDS sequence
>Lus10036165 pacid=23141186 polypeptide=Lus10036165 locus=Lus10036165.g ID=Lus10036165.BGIv1.0 annot-version=v1.0
ATGGATTCGCCTATCATTCGTTACCTTCGTAGGTCTCCGACTATTCTATCTCAGCATGATTTCGACGGAGTTGATGCCGAAGATGTCTTTTGCTCTCCTT
CGCCTATGGCTAAGAACAGCCAATTCAGCAGCTCCCCCGGAGGAAACAACCGCGGCGTCACCAGCATTGGTAGATCGTTGTCTTCGCTTTCTTCTTTGGA
AAACGTGATTAAGTCATCGTTGCTCTCTGCCTCTCCATTGAAGGTGATGGAGGACGACGTGTTGGTGATGGATGAGATCGGTGTGGTACCAGCTCTCGGA
GTTGCTAGGGTTTCTAGTAAGACGCGTGTGTTGTCGGAGTTTAGTGGATCGTCGTCAAACAACACTTCCTCTCCTTCGTCCGGGAACAGAATTAACAAGA
CTGAACTTTGTAAGGCTTGGGTGGATCATCAATACTGCCGCTACGCGACTAAATGCCAGGTTCGAAGTTACAGGTCACTGACTCCACCATCATACCCTAG
AGACACAACAGGAAGCGGAAGAAGATTTGCTGCTGATGCAAAGAAGGTCATTTTCATGAAATCAGAATTGTCAGGCAAGAAGACAAAGAGCAGTGCAGGG
TTGGAAAATAAGGCCATTAATCCCACCCCAATCTCCAATGGAAGCTCAACACATGTGAACAGAAGTACCATACAGATGAGCTCATCCAATTGGTCACCCT
TGGATGATAACATTGAGATCATCCTGCCACTCCATACCGAGAAAGGCAGCTCAAGGGAACATATTGATGCCTATATCAACCGTATACTTCATAGACCCAG
TACAAGGAAAAGGTTACCTGCGTTCAGTGAGTTGTGCCCGTAG
AA sequence
>Lus10036165 pacid=23141186 polypeptide=Lus10036165 locus=Lus10036165.g ID=Lus10036165.BGIv1.0 annot-version=v1.0
MDSPIIRYLRRSPTILSQHDFDGVDAEDVFCSPSPMAKNSQFSSSPGGNNRGVTSIGRSLSSLSSLENVIKSSLLSASPLKVMEDDVLVMDEIGVVPALG
VARVSSKTRVLSEFSGSSSNNTSSPSSGNRINKTELCKAWVDHQYCRYATKCQVRSYRSLTPPSYPRDTTGSGRRFAADAKKVIFMKSELSGKKTKSSAG
LENKAINPTPISNGSSTHVNRSTIQMSSSNWSPLDDNIEIILPLHTEKGSSREHIDAYINRILHRPSTRKRLPAFSELCP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10036165
[exp]
0 1
AT1G32170 XTH30, XTR4 xyloglucan endotransglycosylas... Lus10012115
[exp]
2.0 0.9213
Lus10021703
[exp]
5.3 0.9064
AT1G14590 Nucleotide-diphospho-sugar tra... Lus10041975
[exp]
7.3 0.9110
AT1G43710 EMB1075 embryo defective 1075, Pyridox... Lus10028592
[exp]
11.8 0.9110
AT4G01240 S-adenosyl-L-methionine-depend... Lus10031968
[exp]
12.6 0.8750
AT3G11470 4'-phosphopantetheinyl transfe... Lus10021344
[exp]
14.1 0.8790
AT1G32440 PKP3 plastidial pyruvate kinase 3 (... Lus10011057
[exp]
14.4 0.9093
AT1G02520 MDR8, ABCB11, P... multi-drug resistance 8, ATP-b... Lus10010067
[exp]
18.6 0.9085
AT5G13110 G6PD2 glucose-6-phosphate dehydrogen... Lus10003134
[exp]
23.6 0.9076
AT1G26750 unknown protein Lus10019740
[exp]
25.1 0.8859

Lus10036165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.