Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01070 658 / 0 Lung seven transmembrane receptor family protein (.1.2) AT1G72480 507 / 1e-176 Lung seven transmembrane receptor family protein (.1) AT1G61670 458 / 3e-157 Lung seven transmembrane receptor family protein (.1) AT1G10980 312 / 2e-100 Lung seven transmembrane receptor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005732 [exp] 964 / 0 AT2G01070 678 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Lus10008125 [exp] 529 / 0 AT1G72480 719 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10013162 [exp] 523 / 0 AT1G72480 715 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10030521 [exp] 478 / 1e-164 AT1G61670 612 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10012872 [exp] 473 / 5e-163 AT1G61670 604 / 0.0 Lung seven transmembrane receptor family protein (.1) Lus10025135 [exp] 297 / 1e-95 AT1G61670 441 / 4e-152 Lung seven transmembrane receptor family protein (.1) Lus10025219 [exp] 221 / 4e-69 AT1G61670 308 / 6e-104 Lung seven transmembrane receptor family protein (.1) Lus10025218 [exp] 186 / 2e-55 AT1G61670 303 / 2e-101 Lung seven transmembrane receptor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G209400 [exp] 639 / 0 AT2G01070 650 / 0.0 Lung seven transmembrane receptor family protein (.1.2) Potri.001G166500 [exp] 541 / 0 AT1G72480 738 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.003G068500 [exp] 541 / 0 AT1G72480 747 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.006G109000 [exp] 474 / 8e-164 AT1G61670 691 / 0.0 Lung seven transmembrane receptor family protein (.1) Potri.016G137700 [exp] 464 / 9e-160 AT1G61670 683 / 0.0 Lung seven transmembrane receptor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0192 [flax] [poplar] GPCR_A PF06814 [flax] [poplar] Lung_7-TM_R Lung seven transmembrane receptor
Representative CDS sequence Show only first row Show all	>Lus10036166 pacid=23141063 polypeptide=Lus10036166 locus=Lus10036166.g ID=Lus10036166.BGIv1.0 annot-version=v1.0 ATGGAGATAACTCACCGCAGTCTCCTCCTCATCATCCTCTTTCTTAACCATTATTTCCTTTTAGCCTCCTCCTCCATTCACATCTATAAGGATCAACCCT TCACCGAAGTTGGAAATGCTTTCCTTCTCTCTGGAGGCAGCGAAGGCATTGTCGCCTCCACCGCCGCCACTGCTCTTCCTCCTTACACTGTTGACTCTTC TTCTTACGCTATCCCGCGCTCTATCCACGATGGCCGTTCCTACATCCGGTTTGAGAATGTCACCTTCTGGAGGTCAAAGGCCGCAGCTGATGAGGATCCA GATATGGATCATGATACAGGACTTGTTCAAGTTGTCATGTTTGAGGCTGCTGATCGAAATAGTATTGGTGGTTCTGCTTATGGCGGACAGAGATCAATCT GTTGTACACCTGACCTTGCTAAGCTTGAAGGTTGCAAGGAAGGTCAAGTGATTAGGATACCTTCTGGAACTGATATTAACTGGCCAATAGTTTTAAATGT CAACTTCAGAGGCGATGACTTGTCTACAAAACTAAATGATGAAGATGTGTACGTTACCAAAACCGGGATGTATAACTTGTTTTTCGTTGCATGTGATCCA AAGCTCAAGGGACTTGTAATGAGTGGGAAGACAATTTGGAAGAACCCGGATGGTTATTTGCCTGGTAGGATGGCCCCTCTAAGGAAGTTTTATGTGCTTA TGTCTGTTGCATATGTGTTGCTTAGCTTGATATGGTTCACCCAGTACTTGAGGTATTGGAAGGATATACTGCAACTTCAGCATTGTATCACTGCTGTTAT AGCTTTAGGATTATTTGAGATGGTTCTTTGGTATGCAGAGTATGTGAACTTTAACAGCTTAGGTATCAGGCCTGTTGCAATCACTACATGGGTTGTGACG ATTGGAGCTGTAAGGAAAACAGTTTCTCGTCTACTTCTACTCTCTGTTTCGATGGGCTACGGTGTTGTGCGCCCCACTCTTGGTGGTCTTACCTCAAAGG TGCTTCTTCTAGGGATGACTTACTTTTTGGCGTCAGAGTTGCTTGATATCACCGAATATGTCGGGACCATTAATGACATATCTGGAAGAGCAAGGTTACT TTTAGTACTTCCTGCGGCATTCCTCGACGCATTTTTTATATTGTGGATATTTAAATCTCTTCAGAAAACATTAGAACAGTTGCAGTCAAAAAGGAGCTCT GTCAAGTTGGATATCTATAGGAAATTCTCAAATGCACTAGCGGTATCAGTTATTGCATCTGTTGTGTGGATAGTTTACGAGGTTTACATCAAAGCAACGG ACCCATTCAATGAGCGGTGGCAAAGTGCATGGATTATCACTGCTTTCTGGGACCTTCTTACTTATGTACTGCTCTGTGTCATCTGCCATCTATGGGCTCC ATCTGTAAATTCTCAAAGGTATGCTTACTCAGAAGAGTTAGGTGAAGAAGATTTTGACGACGAAACCCAGTCTCTGACGAGGGGGAAGGCGGATGGCGAT ATTAGTTTAGTAGAAAGCAATGGTGGTCCCGTCGGTACTTTTGATGATGAAGAAGATGTAATGGAAGAAGATAAACGAGAATGA
AA sequence Show only first row Show all	>Lus10036166 pacid=23141063 polypeptide=Lus10036166 locus=Lus10036166.g ID=Lus10036166.BGIv1.0 annot-version=v1.0 MEITHRSLLLIILFLNHYFLLASSSIHIYKDQPFTEVGNAFLLSGGSEGIVASTAATALPPYTVDSSSYAIPRSIHDGRSYIRFENVTFWRSKAAADEDP DMDHDTGLVQVVMFEAADRNSIGGSAYGGQRSICCTPDLAKLEGCKEGQVIRIPSGTDINWPIVLNVNFRGDDLSTKLNDEDVYVTKTGMYNLFFVACDP KLKGLVMSGKTIWKNPDGYLPGRMAPLRKFYVLMSVAYVLLSLIWFTQYLRYWKDILQLQHCITAVIALGLFEMVLWYAEYVNFNSLGIRPVAITTWVVT IGAVRKTVSRLLLLSVSMGYGVVRPTLGGLTSKVLLLGMTYFLASELLDITEYVGTINDISGRARLLLVLPAAFLDAFFILWIFKSLQKTLEQLQSKRSS VKLDIYRKFSNALAVSVIASVVWIVYEVYIKATDPFNERWQSAWIITAFWDLLTYVLLCVICHLWAPSVNSQRYAYSEELGEEDFDDETQSLTRGKADGD ISLVESNGGPVGTFDDEEDVMEEDKRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	0	1
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	1.0	0.9377
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10012162 [exp]	4.5	0.9201
AT2G01970			Endomembrane protein 70 protei...		Lus10026371 [exp]	4.6	0.9189
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	5.3	0.9128
AT1G31070		GlcNAc1pUT1	N-acetylglucosamine-1-phosphat...		Lus10038366 [exp]	6.3	0.9086
AT3G01810			unknown protein		Lus10037001 [exp]	6.3	0.8853
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10015099 [exp]	6.7	0.8896
AT5G18280		ATAPY2	apyrase 2 (.1.2)		Lus10006546 [exp]	7.7	0.9124
AT3G23690	bHLH	bHLH077	basic helix-loop-helix (bHLH) ...		Lus10041261 [exp]	8.4	0.8911
AT1G23190		PGM3	phosphoglucomutase 3, Phosphog...		Lus10003712 [exp]	8.5	0.9066

Compare expression of checked genes

Lus10036166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.