Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24580 645 / 0 REN1 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) AT5G19390 471 / 5e-155 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) AT5G12150 450 / 6e-146 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005733 [exp] 479 / 1e-163 AT4G24580 350 / 1e-113 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Lus10036048 [exp] 318 / 2e-102 AT5G19390 414 / 3e-142 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Lus10036047 [exp] 98 / 7e-21 AT5G19390 635 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G104300 [exp] 681 / 0 AT4G24580 793 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.005G157400 [exp] 652 / 0 AT4G24580 786 / 0.0 ROP1 ENHANCER 1, Rho GTPase activation protein (RhoGAP) with PH domain (.1) Potri.001G275200 [exp] 487 / 8e-159 AT5G19390 1080 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4) Potri.009G069700 [exp] 485 / 3e-158 AT5G19390 1060 / 0.0 Rho GTPase activation protein (RhoGAP) with PH domain (.1), Rho GTPase activation protein (RhoGAP) with PH domain (.2), Rho GTPase activation protein (RhoGAP) with PH domain (.3), Rho GTPase activation protein (RhoGAP) with PH domain (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10036167 pacid=23141077 polypeptide=Lus10036167 locus=Lus10036167.g ID=Lus10036167.BGIv1.0 annot-version=v1.0 ATGACTACCAACAAAAGCGCCACAGATATTAGCCAGCCATCTCAGCAAGGAGATGGCGCTGCTGTTCCAGCGTCCTTATCAGCAGGAGGGGGAGGAGCAG CAACTGGAGGCAAGAATGATAACCAGGCTTCTCGCGGCACGAATCCTATCCTTAAGAGCGGTCCACTTTTTATATCATCGAAAGGAATTGGATGGACATC TTGGAAGAAGAGGTGGTTTATCTTGACGAAAACTTCACTGGTTTTCTTCAGAAGTGATCCGAGTGTTGTTGCTCAAAGAGGCAGTGAAGCAAACCTAACC CTTGGTGGTATTGACCTCAACAATTCTGGCAGTGTGGTTGTCAAGGCTGACAAAAAGCTATTGACAGTACTCTTTTCAGACGGTCGTGATGGTCGAGCGT TCACTCTCAAGGCTGAAACGTCAGAAGATTTGTTTGAGTGGAAAACTGCTCTTGAGAGTGCTCTGACACAAGCACCTTATACTGGTAATGTGATGGGACA AACTGGTGTCATCAGGAATGATCAACCTGAAGCTACTGATACAAAAGTGGAGAGGCCGGTAGTGAATGATAAGCCTCCTCCAGTATCGTTGGTGCTTGGA AGACCGATTCTTCTTGCTTTGGAAGATGTTGACGCATCTCCGTCTTTTCTAGAGAAGGCTCTCAAGTTTATAGAAGAACATGGAGTTAGGGTGGAAGGCA TCTTGCGACAAGCCGCCGATGTTGATGATGTTGAGCACCGGATTCGGGAGTACGAACAGGGGAAGACAGAGTTCTCTCTTGGGGAGGATGCACATGTAGT TGGTGATTGTATTAAGTACTTTCTACGGGAATTGCCATCATCTCCAGTACCTGCATCTTGCTGTCATGCTTTACTAGATGCATGTAGAAGTGGCAATAGA GTTGCATCCATGAGATCAGCAATAATGGAAACATTCCCAGAGCCAAACCGTCGCTTGCTGCAGAGAATTCTTGTGATGATGCAACAAGTGGCTTCACATA AAGAACGAAACAGAATGAGCATTTCAGCTGTGTCTGCTTGCATGGCGCCATTACTTCTCCGTCCTCTTTTGTCAGGTGATTGTGAGATAGAAAATGATTT TGACGTAGGTGGAGATGGTTCCATGCAACTTCTCCAAGCAGCTGCGGCTGCTAATCATGCTCAAGCCATTGTTATAACTCTAATGGAAGAGTATGAAAGT ATATTCGGTGACGGCACTATGTCTCCTGGGTTATACTCTGATTCAGAAGAGGGTGAGAGTGAGGATGAGGAGTTAACTGAAGATGACGAATCTTATGAAG ATGATGATGATGATGAAGAAGGATCAATAGGGTCTGAGGAAGATTCGGATGACTATATTCAAGATGGATCAAACAGAAGCTGCAGTGGGAGCCATGTCTC TGACGAAGATGATCTTGAAGACACCAAGGGTTCTGGTGATCTGAGCAGACATTCAACATCCTCTGAGGTTGTCAATCCTAAAAAAGATATGCCAAGCTCA GATCAAAATCCAATACTACAAAGTGACGCTGACGTCAGACAAGAGAAGGGCCAAAATGAAATGATGAAAGATTTATCACACTCTAGTCAACTGTTAAGAG CTGATTCCGATGATTCAAGTCAGAATGATAAATCATATCCTCTCATGAGACAGTCTTCAAGTATATCCGGTCGGCGAACCCTGTGGGGGCGTACCTCTGC AAAGAAGAACCTTTCCATGGAATCTATTGGTTTTACAGTTGAAGATGAAGAATTTGAGATCCAAAAATTGGAAGCCAGTAAAGCTGCATTACAGAAAAAA ATAGTTGAAGAGGCTGAAGGCAATGCAGGATTGCAGGGCAACTTGCAAGAAAGAAAGAAGGCCCTGCGCGAGTGTCGTCATGCACTAAAGCAAGATGTCA CAAGACTAAGGGAACAACTCCAGATGGAACGAGAGAGAAGGAGAGTTCTAGAGTCAGGACTAGATCCAACAGATGAGCTGGGGAACATTCCAAATACATT TGATGAAAAGACGAAGGCAGACTTGAAGGAAATAAGTCAAGCAAATGTTGAAATCACTAATTTGCAGAAAGAGGTTGACAAGCTAAGCGTCCAGCTCATT CAGCTACATGAACATAACGTTGATTCTACTCCCGATCAGCATGCACGCACTACTCATCTGGGGAAATCACAGAAGGATACTGAGGCCACTACTGCACCAC CTGCTATTGGCAAGTCTACAAGTAAGGATGGCCATATTGGTAGGACTAAGAGTTCGAAGGACAAGAAACACGAATCAAATATAAACAACACAGATCCAAC ACAAAGTGATAGCAGCAAATTTCTGAAGGAGCTCAGAAGCCAAGCTTCTGCTAACAATGAGCTTCAGAATGCGGACAAGGCGACATCCGCATCATCGAGT GCAAAGAACAGGGGCTCTGACACTCGTCCACAACGCCAGGGTTGGGATTTCCCAGACAAAGGCAAAGGATTAGAGGGGTTACAAGAAGGTTGTGATAATA GAACAATAAAGCAAGATCAGCTGACAGTGAAAACAGATTCTGAACCCCAAAGGGGAAGATCAGAAAGCCACATTGTGGAGAATGCTCAAGGAACGAGAAC TAACCAAGCTCCAGGAGTCTCGAGAACCGACTCTAGATAG
AA sequence Show only first row Show all	>Lus10036167 pacid=23141077 polypeptide=Lus10036167 locus=Lus10036167.g ID=Lus10036167.BGIv1.0 annot-version=v1.0 MTTNKSATDISQPSQQGDGAAVPASLSAGGGGAATGGKNDNQASRGTNPILKSGPLFISSKGIGWTSWKKRWFILTKTSLVFFRSDPSVVAQRGSEANLT LGGIDLNNSGSVVVKADKKLLTVLFSDGRDGRAFTLKAETSEDLFEWKTALESALTQAPYTGNVMGQTGVIRNDQPEATDTKVERPVVNDKPPPVSLVLG RPILLALEDVDASPSFLEKALKFIEEHGVRVEGILRQAADVDDVEHRIREYEQGKTEFSLGEDAHVVGDCIKYFLRELPSSPVPASCCHALLDACRSGNR VASMRSAIMETFPEPNRRLLQRILVMMQQVASHKERNRMSISAVSACMAPLLLRPLLSGDCEIENDFDVGGDGSMQLLQAAAAANHAQAIVITLMEEYES IFGDGTMSPGLYSDSEEGESEDEELTEDDESYEDDDDDEEGSIGSEEDSDDYIQDGSNRSCSGSHVSDEDDLEDTKGSGDLSRHSTSSEVVNPKKDMPSS DQNPILQSDADVRQEKGQNEMMKDLSHSSQLLRADSDDSSQNDKSYPLMRQSSSISGRRTLWGRTSAKKNLSMESIGFTVEDEEFEIQKLEASKAALQKK IVEEAEGNAGLQGNLQERKKALRECRHALKQDVTRLREQLQMERERRRVLESGLDPTDELGNIPNTFDEKTKADLKEISQANVEITNLQKEVDKLSVQLI QLHEHNVDSTPDQHARTTHLGKSQKDTEATTAPPAIGKSTSKDGHIGRTKSSKDKKHESNINNTDPTQSDSSKFLKELRSQASANNELQNADKATSASSS AKNRGSDTRPQRQGWDFPDKGKGLEGLQEGCDNRTIKQDQLTVKTDSEPQRGRSESHIVENAQGTRTNQAPGVSRTDSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10036167 [exp]	0	1
AT1G29950	bHLH		basic helix-loop-helix (bHLH) ...		Lus10004926 [exp]	1.4	0.9141
AT1G69560	MYB	LOF2, ATMYB105	LATERAL ORGAN FUSION 2, myb do...		Lus10018936 [exp]	2.8	0.8945
AT2G36330			Uncharacterised protein family...		Lus10002372 [exp]	3.9	0.8878
AT4G22200		AKT3, AKT2/3	potassium transport 2/3 (.1)		Lus10019944 [exp]	4.9	0.8870
					Lus10040811 [exp]	5.8	0.9096
AT4G24015			RING/U-box superfamily protein...		Lus10032418 [exp]	6.9	0.8780
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10029405 [exp]	7.5	0.8976
AT2G25625			unknown protein		Lus10008096 [exp]	7.7	0.8748
AT2G25320			TRAF-like family protein (.1)		Lus10005821 [exp]	10.6	0.8271
AT1G51990			O-methyltransferase family pro...		Lus10002668 [exp]	12.3	0.8814

Compare expression of checked genes

Lus10036167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.