Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G16080 177 / 8e-53 ATCXE17 carboxyesterase 17 (.1) AT1G19190 173 / 1e-51 alpha/beta-Hydrolases superfamily protein (.1) AT1G68620 169 / 5e-50 alpha/beta-Hydrolases superfamily protein (.1) AT5G27320 169 / 8e-50 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 165 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1) AT3G48690 165 / 2e-48 ATCXE12 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) AT2G45600 165 / 2e-48 alpha/beta-Hydrolases superfamily protein (.1) AT3G05120 163 / 1e-47 ATGID1A, GID1A GA INSENSITIVE DWARF1A, alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 162 / 2e-47 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008439 [exp] 405 / 1e-142 AT5G06570 281 / 8e-94 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10013377 [exp] 412 / 5e-132 AT3G44050 1290 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013376 [exp] 353 / 5e-122 AT5G06570 256 / 3e-84 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015989 [exp] 348 / 3e-120 AT5G06570 337 / 1e-115 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10015988 [exp] 334 / 1e-114 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10016204 [exp] 248 / 4e-81 AT5G06570 260 / 7e-86 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10029341 [exp] 235 / 2e-75 AT5G06570 293 / 5e-98 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10024087 [exp] 205 / 1e-63 AT5G16080 187 / 1e-56 carboxyesterase 17 (.1) Lus10002019 [exp] 188 / 2e-57 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155800 [exp] 534 / 0 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G198800 [exp] 384 / 4e-134 AT5G06570 373 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G065000 [exp] 377 / 3e-131 AT5G06570 376 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G127600 [exp] 218 / 7e-69 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.016G031500 [exp] 209 / 2e-65 AT1G68620 159 / 5e-46 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 208 / 5e-65 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 204 / 3e-63 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.008G118400 [exp] 204 / 4e-63 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192600 [exp] 198 / 3e-61 AT1G68620 173 / 2e-51 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G192650 [exp] 197 / 7e-61 AT5G16080 182 / 1e-54 carboxyesterase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07859 [flax] [poplar] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036168 pacid=23141147 polypeptide=Lus10036168 locus=Lus10036168.g ID=Lus10036168.BGIv1.0 annot-version=v1.0 ATGTCTGAAACGGGTGGCTCTGATTTCGAAGAATGCCGGGGAGTCCTCCGGGTTTACAAAAATGGATCAGTCTGGCGGTCATCTGAACCAAGTTTTAATG TCCCAGTCAACGATGATGGCTCTGTAATCTGGAAAGATGAAATCTTTGACGCAGAGAACAACCTCTCCCTCCGTCTCTACAAACCATCCTCTTCTAATAA GACGAAGCTCCCAATCTTGTACTACATCCATGGTGGGGGTTTCTGCATTGGTTCCAGGACATGGCCAAACTGCCAAAACTACTGCTTTAAGCTAGCTATG GAGCTTCAAGCAGTTGTGATTGCACCTGACTACAGGCTGGCTCCAGAAAACCGCCTCCCAGCAGCAATTGAAGATGGATACATGGCTTTGAAATGGCTCC AAGATCAAGCTCAAGCTGAAGAACCAGACACGTGGCTGAGTGATGCTGCTGATTTTGAGCAAGTGTTCATCTCAGGTGACTCCGCTGGTGGTAACATTGC TCATAACTTGGCTGTCAGGCTTGGAGCTGCTTCCCTTGAATTAGCTCCTGTTGTTGTCAAGGGTTATGTCTTGCTCGCACCGTTTTTCGGAGGTACCGTG CTCGCCGAATCCGAGGCTAAAGGTCCCAAAGATGCCTTCCTCAACCTCGAGCTCATTGACAGGTTCTGGAGACTATCTGTTCCTGAGGGAGACACAACTG ATCATCCGTTGATAAACCCATTTGGACCAAACAGCAAGGATCTCCAACCAGTGACTCTCGATCCCATCCTGGTTGTGGTGGGGGGAAGTGATCTTCTTAA GGATCGTGGTAAGGATTATGCAGAGAAGCTGAACAAGTGGGGAAAGAAGGTTGAATATGTCGAATTTGAAGGACAGCAGCATGGATTCTTCACCATTAAC CCCGATTCTGAACCAGCAAACAAACTGATGGCAATGATTAAGAGTTTCCTTGAGGAGAATTCAATTTAG
AA sequence Show only first row Show all	>Lus10036168 pacid=23141147 polypeptide=Lus10036168 locus=Lus10036168.g ID=Lus10036168.BGIv1.0 annot-version=v1.0 MSETGGSDFEECRGVLRVYKNGSVWRSSEPSFNVPVNDDGSVIWKDEIFDAENNLSLRLYKPSSSNKTKLPILYYIHGGGFCIGSRTWPNCQNYCFKLAM ELQAVVIAPDYRLAPENRLPAAIEDGYMALKWLQDQAQAEEPDTWLSDAADFEQVFISGDSAGGNIAHNLAVRLGAASLELAPVVVKGYVLLAPFFGGTV LAESEAKGPKDAFLNLELIDRFWRLSVPEGDTTDHPLINPFGPNSKDLQPVTLDPILVVVGGSDLLKDRGKDYAEKLNKWGKKVEYVEFEGQQHGFFTIN PDSEPANKLMAMIKSFLEENSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06570			alpha/beta-Hydrolases superfam...		Lus10036168 [exp]	0	1
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	2.0	0.9659
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	4.0	0.9507
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	4.2	0.9407
AT5G19730			Pectin lyase-like superfamily ...		Lus10028364 [exp]	10.0	0.9429
AT4G35150			O-methyltransferase family pro...		Lus10033656 [exp]	10.0	0.9469
AT3G26170		CYP71B19	"cytochrome P450, family 71, s...		Lus10018261 [exp]	10.4	0.9492
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	10.6	0.9402
AT5G19970			unknown protein		Lus10019451 [exp]	14.1	0.9267
AT2G16750			Protein kinase protein with ad...		Lus10014122 [exp]	14.1	0.9358
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005513 [exp]	16.1	0.9126

Compare expression of checked genes

Lus10036168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.