Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27170 1338 / 0 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT3G47460 115 / 8e-26 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT5G62410 105 / 1e-22 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT5G48600 69 / 2e-11 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT3G54670 62 / 2e-09 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019382 [exp] 161 / 2e-45 AT3G44020 136 / 2e-41 thylakoid lumenal P17.1 protein (.1) Lus10017012 [exp] 153 / 3e-41 AT3G26770 139 / 2e-39 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10027215 [exp] 119 / 7e-27 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10030681 [exp] 107 / 3e-23 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10005240 [exp] 97 / 7e-20 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10024895 [exp] 63 / 1e-09 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10022923 [exp] 63 / 1e-09 AT3G54670 1603 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 58 / 1e-09 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 62 / 2e-09 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155200 [exp] 1515 / 0 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 127 / 2e-29 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.003G108400 [exp] 125 / 8e-29 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G154550 [exp] 98 / 2e-24 AT2G27170 91 / 4e-23 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.017G083200 [exp] 78 / 4e-14 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.005G224900 [exp] 63 / 2e-09 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.009G155700 [exp] 47 / 1e-05 AT3G44020 143 / 4e-44 thylakoid lumenal P17.1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10036169 pacid=23141008 polypeptide=Lus10036169 locus=Lus10036169.g ID=Lus10036169.BGIv1.0 annot-version=v1.0 ATGGCTGCCCTCTTTGCTTCTTGTTACTCCTTTCACTACCATTCTTCTGCTCCATCGACGTCGTCTTGCACGTGTAGCAGCAGCAGCAATCATCGAGTAG AATTGCCATTGAAGAAGTCGAAACTTGTTTCTCCGTCGCCGTGCAGCAAGCGAAAGGTCCTCCCAAAATCAATCAGCAATGTGATAGTAGTTCCGCCGCT TTTTCTCTTCACAGGATCATCTCCTCCCAACACTCAGACCGTCTTAGTCACTGTCAGCGTATTGTCCGCCATTGCCCTTTCTCTCTTCCTCGGCCTCAAA GGAGATCCAGTGCCGTGTAGCAAATGTGCTGGAAATGCCATTCGCTTTGTGCTAAGTGACCTGTTTCAAAATCTGAGAAGTGAAGATAGACACACTCTAC TGCATGAAGGTGCAGGTCATCAAGTGTTATCTGCCTTTGTGGAGATCGTTTTTGATAATTCTGATAATCGCATCCCGGTTGATAAGGAGAAAGTGCATTT GCGCCGAACAATCAGCTCCAAAAAAGATGAGTACTTCCTGGATGGCAAGCATATTACGAAAACAGAAGTTATGAACTTGTTGGAAAGTGCTGGTTTCTCT CGCTCGAACCCATATTATGTTGTGCAACAAGGAAAGATTGCATCATTAACCTTAATGAAAGATTCTGAGCGTCTGGATTTGCTGAAGGAAATTGGTGGAA ACAAGAGAAAGCAAATAATACAAGTTGTTCAATACTTGGACGATCGCCTAAGGGAACTGGATGCAGAAAAAGAAGAGCTAAGGAAGTACCAACAGCTTGA CAAGCAGCGTAAATCTCTAGAATATACAATTTACGATAAAGAACTCCAAGATGCTCGGCAGAAACTGACAGAGGTTGAGTTGGCTCGAAACAAGGTTTCA GAAAATTCGTCTAAGATGCACCAAGATGTTCTGGATGCCCATGAGAGGTGCAAGGAGATCGACACAACACTGAAAGATCTGGCAAAAGAACTCCAAGTTT TGAACAAAGAGAGGGAAGATGTGGAGAAGCGACACACTCAAGCAATGAAGATACATACAGAACATGAGCTTGATGTGAAAGATATGCAGGAGAGGATGGC TGGAGCTAGCCAAGCCAAAGATGATGCAGCTCACCAGCTAAAATTTGTCGAGAAAGAAATTCAAGATTCATTGGACGAGCTGGAGAGGACTAGCCCATTG TATGAGAAACAAGTGCTAAGGGAAAAGAAGAAAACTAAAGAGATAATGGAGCGTGAAAAGGAGCTTAGCATACTATATCAAAAGCAAGGTCGAGCCACTC AATTTGCCTCCAAAGCTGAGCGAGACAAATGGCTTCGGAAGGAAATTAACGACTTGCAACGCGAGGGTAAGCTTAAACAAGAGATTAATAGGATTGACGC TGACTTAGAAAAGCAAAATAATTACATTGAGACTCGGAAGGCTGAGATGGAAAGCAAACAATTTCTCATCTCCCAGTCACGGAAAGGATTCACCAATCAC AAAGCTCAGAGAGATAAGCTGCAAGATGAACGAAAGGGATTGTGGGGGAAGGAAAGTGCACTTGATGCTGAAATTGATAAGCTGAAGACCGAACTTGAGA AAGCTAAAAAGAGTCTTGATCATGCAACTCCTGGTGATGTGAGGAGAGGACTTAATTCCATGCGGCGTATTTGTAAAGAACATGGCATCACTGGAGTTTT TGGGCCAATTATAGAGTTGCTTGATTGTGATGAAAAGTTTTTCACGGCTGTGGAAGTTACTGCTGGAAATAGCCTTTTTCATGTGGTGGTTAAGGATGAT GGGGTTTCAACTCAAATTATTAGACACCTTAATGCACAGAAGGGTGGACGAGTCACCTTTATACCTCTGAATAGGGTGAAGGCTCCAAGAGTGAACTATC CAACTAATTCTGATGATGTGGTGCCTTTAAAAAAGAAGTTGAAGTTCAAGGAAATTTTTGACGCTGCATTTCAACAGGTATTTGGTAGAACAGTGATTTG CAGAGATCTAGATGTTGCCACAAGAATTGCTAGAACTGATGGTCTAGACTGCATTACATTGGAAGGTGATCAAGTAAGCAAGAAAGGTGGCATGACTGGG GGATTTTATGACCACCGCCGCTCAAAACTGAAGTTTATGACCGTTATCATCCAGAGTCAGAATTTGATAAAAGTGAAAGAGGAGCGGAAAATCACTGAGC TTGTAACAGAGCAACAGAAAACTGATGCTCAGCATGGGCATGATAAATCAGAAGTTGAGCAGCTTAAACAGGATATTGCGAATGCTAATAAGCAGAAAGA GCTCTATTCTAAAGCCCGGGACATGAAGTGTAGAAAAGCAGAATTGGAGACAAATCTTACAACCAACCTCAAAAGGAGAAGGCAAGAACTAGAAGCCATA ATATCCTCTCCAGAAGATGATGCGCTGCATAGTGATGCTGAATTGAAGGCACAAGAATTACAGGATGCTAAATCACGAGTTGAAGTTGCAAAACAAGACC TTCAAAGAGTTTCTGGTAGCATAAATGAGATAAAAAAGGAGCTGAAGAAGATAAAAGATGAAAAGATAAGCTGGAAGACGTTAGAAGACAAACATGAGAG GATACTCCAGGATCAAGCCAAGGAACTGGAGCAGCTTCTGAGTAACAGGAATGTACTTCTTGCCAAGCAAGAGGAATTCTCCAACAAAATTAGGGAACTG GGTCCACTTTCGTCAGATGCTTTTGATACGCACAAGCGAAAGAACATCAAAGAGTTGCAGAAACTGCTCCATAAGTGCAATGAGGAACTACAAAAGTTTA GTCATGTAAACAAGAAGGCACTAGATCAGTATATAAATTTCTGGGAGCAACGAGAAGAACTCCAGAAAAGGCAAGCTGAACTTGATGAAGGTGATGAGAA AATTAAGGAGCTTATAACAGTTCTAGACCAGCGGAAGGATGAATCTATCGAGCGTACCTTCAAAGGTGTTGCCAGACATTTTAGAGAAGTGTTTTCTGAA CTTGTACAAGGGGGTCATGGCCATCTGGTTATGATGAAGAAGAAGGATGGTGATCAAGGGGATGATGACAATGAGGATGATGAACCTCGCCAAGCCGATG TGGAAGGAAGGGTGGAAAAATACATTGGCGTGAAAGTAAAGGTAGGCGTGGCCAATGTCTTTGTGGGTAGGCGTGGCCAATGTCTTTGTGGGTTGTGGTA TGCTGGAACTGACGTGTCATTTTCAGGGCAAGGGGAAACACAGTCAATGAAGCAGCTGTCGGGGGGCCAGAAAACTGTAGTTGCGATGACGTTGATATTT GCTATACAACGATGCGATCCTGCTCCTTTCTATCTTTTCGATGAAATTGATGCGGCACTGGATCCTCAGTATAGAACAGCTGTTGGGAATATGATACGGC GGCTGGCAGACATGGCAAATACGCAATTCATAACGACAACATTCAGGGCAGAGCTGGTGAAAGTAGCGGACAAGATATACGGAGTGACACATAAGAACAG GGTGAGCGTGGTGGATGTTGTGTCCAAGGATGAGGCCTTGAAGTTCATTGAGAATGACCAGTCCCACAATGCTGTCTGA
AA sequence Show only first row Show all	>Lus10036169 pacid=23141008 polypeptide=Lus10036169 locus=Lus10036169.g ID=Lus10036169.BGIv1.0 annot-version=v1.0 MAALFASCYSFHYHSSAPSTSSCTCSSSSNHRVELPLKKSKLVSPSPCSKRKVLPKSISNVIVVPPLFLFTGSSPPNTQTVLVTVSVLSAIALSLFLGLK GDPVPCSKCAGNAIRFVLSDLFQNLRSEDRHTLLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEKVHLRRTISSKKDEYFLDGKHITKTEVMNLLESAGFS RSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGNKRKQIIQVVQYLDDRLRELDAEKEELRKYQQLDKQRKSLEYTIYDKELQDARQKLTEVELARNKVS ENSSKMHQDVLDAHERCKEIDTTLKDLAKELQVLNKEREDVEKRHTQAMKIHTEHELDVKDMQERMAGASQAKDDAAHQLKFVEKEIQDSLDELERTSPL YEKQVLREKKKTKEIMEREKELSILYQKQGRATQFASKAERDKWLRKEINDLQREGKLKQEINRIDADLEKQNNYIETRKAEMESKQFLISQSRKGFTNH KAQRDKLQDERKGLWGKESALDAEIDKLKTELEKAKKSLDHATPGDVRRGLNSMRRICKEHGITGVFGPIIELLDCDEKFFTAVEVTAGNSLFHVVVKDD GVSTQIIRHLNAQKGGRVTFIPLNRVKAPRVNYPTNSDDVVPLKKKLKFKEIFDAAFQQVFGRTVICRDLDVATRIARTDGLDCITLEGDQVSKKGGMTG GFYDHRRSKLKFMTVIIQSQNLIKVKEERKITELVTEQQKTDAQHGHDKSEVEQLKQDIANANKQKELYSKARDMKCRKAELETNLTTNLKRRRQELEAI ISSPEDDALHSDAELKAQELQDAKSRVEVAKQDLQRVSGSINEIKKELKKIKDEKISWKTLEDKHERILQDQAKELEQLLSNRNVLLAKQEEFSNKIREL GPLSSDAFDTHKRKNIKELQKLLHKCNEELQKFSHVNKKALDQYINFWEQREELQKRQAELDEGDEKIKELITVLDQRKDESIERTFKGVARHFREVFSE LVQGGHGHLVMMKKKDGDQGDDDNEDDEPRQADVEGRVEKYIGVKVKVGVANVFVGRRGQCLCGLWYAGTDVSFSGQGETQSMKQLSGGQKTVVAMTLIF AIQRCDPAPFYLFDEIDAALDPQYRTAVGNMIRRLADMANTQFITTTFRAELVKVADKIYGVTHKNRVSVVDVVSKDEALKFIENDQSHNAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	1.0	0.8942
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Lus10039924 [exp]	2.0	0.8239
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	5.2	0.8040
AT4G27910		SDG16, ATX4	SET domain protein 16 (.1)		Lus10005007 [exp]	5.5	0.8273
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	6.9	0.8052
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	11.0	0.7968
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	11.2	0.8175
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	13.8	0.8177
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	15.4	0.8070
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	17.5	0.8264

Compare expression of checked genes

Lus10036169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.