Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20930 734 / 0 TSL TOUSLED, Protein kinase superfamily protein (.1) AT2G45490 108 / 5e-26 ATAUR3 ataurora3 (.1) AT3G13530 113 / 8e-26 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT2G25880 104 / 9e-25 ATAUR2 ataurora2 (.1.2) AT3G53930 108 / 2e-24 Protein kinase superfamily protein (.1.2) AT2G17890 107 / 2e-24 CPK16 calcium-dependent protein kinase 16 (.1) AT4G32830 103 / 2e-24 ATAUR1 ataurora1 (.1) AT3G07980 108 / 3e-24 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1) AT1G09000 106 / 6e-24 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT1G54960 105 / 1e-23 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019383 [exp] 780 / 0 AT5G20930 649 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Lus10020580 [exp] 112 / 2e-27 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10006266 [exp] 107 / 7e-26 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10024448 [exp] 107 / 1e-24 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 106 / 2e-24 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10029054 [exp] 105 / 3e-24 AT5G58380 483 / 4e-169 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10005487 [exp] 103 / 3e-24 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10034212 [exp] 105 / 4e-24 AT5G45820 473 / 5e-166 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Lus10041914 [exp] 104 / 2e-23 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G155400 [exp] 880 / 0 AT5G20930 914 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.004G193300 [exp] 863 / 0 AT5G20930 886 / 0.0 TOUSLED, Protein kinase superfamily protein (.1) Potri.013G090800 [exp] 119 / 2e-28 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.006G080500 [exp] 111 / 4e-27 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.005G094200 [exp] 116 / 7e-27 AT3G13530 1979 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.006G235000 [exp] 107 / 9e-26 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.010G071400 [exp] 107 / 9e-26 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.008G166500 [exp] 107 / 9e-26 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.007G070100 [exp] 111 / 2e-25 AT3G13530 1960 / 0.0 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) Potri.018G057700 [exp] 107 / 2e-25 AT4G32830 544 / 0.0 ataurora1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10036170 pacid=23141114 polypeptide=Lus10036170 locus=Lus10036170.g ID=Lus10036170.BGIv1.0 annot-version=v1.0 ATGTCCGATTTGTCATTTCTGATCTGTGAAGTTTTCCCCTATATGTTATGCAAGAATCACGCCGCAGTTGACGAGAAGCAAAGACTTAGTGAAGCTGTGG AGAACAAACCTATGGCTGAAGTACATAAGCGAAAGCAAGGTCGTGGCAGGGGAAATTCGGTCTCAGTTAGGGGTCGAGGTTCCAGAGTTACTGATCAGAC AAGATTACAAGTTTCTGCCTCAACAGTTTCCCCTCAAGTTGTTAATGGCCATCTTGAGACTTTGCACAAGGATACTAGGCCCAAAGAGCACATCCAAAAC AATGATCATATTATGTTACAGGAGGAGGTCAAATTGCTACGGATGAAAGTTGCAACTCTAGAGGAGGAACTTCGTACATCTCAACAGCAGGCCAAGGATA GTCAAAGAACTAAAAGAATCTTGGTATCTGTCGTCCAGGAACTAAAGGAATTAAAGGACTGCGAACAGAAAATAAAGCCAAAGAGAATAAAGATAATATC TGATCTGCTGATATCAGTTTCTAAAGCAGAGAGGCAAGAAGCCAGGATGAAAGTCCGGCAAGATTCTTTAAGACTTGGCAGTAGGCATTTATTAGAAACA AAGGAGGCTGTTGATCGCCAACGGAAATCATTAAAGAAACGACAATCTGACAAAGGTGAAGCTGCTGATGCGGAATCTGGAGTGCAGGAAGAGGATCTAC TAATCCAGGATGAAATTCTTAAATCTCGTTTGGCAAGCATTAAACGTGAGGAAGAAACTGTCTTACGTGAGAGAGACCGGTATGAGCTAGAAAAGGCTAG GCTGATACGTGAAATGAAACGTATACGAGATGAGGATGGGTCACGCTTCAATAATTTTCAGATATTGAATCACCGATATGCGCTGTTGAACCTCCTTGGT AAAGGAGGATTTAGTGAGGTTTACAAGGCTTTTGATTTGGTTGAGCACAGATATGTGGCATGTAAACTTCATGGTCTGAATGCTCAGTGGAGTGAGGATA AGAAGCAAAGTTATGTAAGGCATGCAATACGCGAATATAACATTCACAAGACCCTGGTGCATAATCATATTGTTCGGCTTTGGGATATCTTCGAGATAGA TCAGAATACGTTCTGTACAGTCTTGGAGTATTGCAGTGGTAAAGATCTTGATGCGGTTCTTAAAGCAACACCTGTATTGCCTGAAAAGGAAGCCAAGATC ATTATTGTTCAAATATTTCTAGGTCTTCTTTACCTGAATAGAAGGGCACAGAAGATCATTCATTATGATCTGAAGCCTGGGAATGTTTTATTTGATGAAT TTGGTGCTGCCAAAGTTACTGATTTTGGTCTCAGTAAGATTGTGGAGGACGACGTTGGATCTCAAGGAATGGAACTTACGTCCCAGGGAGCTGGGACATA TTGGTACTTGCCACCAGAATGCTTTGAGCTTAGCAAGACACCTTTAATATCTTCAAAGGTTGATGTATGGTCGGCTGGAATTTTATTGTATCAAATGCTG TTTGGAAAAAGGCCTTTTGGACATGACCAATCTCAGGAAAAAATATTAAGGGAAGATACAATCATCAAAGCTCGTAGGGTTGAATTTCCTTCCAAACCCA CAGTCTCAAATGAGGCGAAGGAGTTCATCCGACGATGTCTTACATACAACCAAATGGAGAGGCCAGATGTACTGACCATTGCTCAGGATCCATATCTGAC TTACATAAAGAAGTAA
AA sequence Show only first row Show all	>Lus10036170 pacid=23141114 polypeptide=Lus10036170 locus=Lus10036170.g ID=Lus10036170.BGIv1.0 annot-version=v1.0 MSDLSFLICEVFPYMLCKNHAAVDEKQRLSEAVENKPMAEVHKRKQGRGRGNSVSVRGRGSRVTDQTRLQVSASTVSPQVVNGHLETLHKDTRPKEHIQN NDHIMLQEEVKLLRMKVATLEEELRTSQQQAKDSQRTKRILVSVVQELKELKDCEQKIKPKRIKIISDLLISVSKAERQEARMKVRQDSLRLGSRHLLET KEAVDRQRKSLKKRQSDKGEAADAESGVQEEDLLIQDEILKSRLASIKREEETVLRERDRYELEKARLIREMKRIRDEDGSRFNNFQILNHRYALLNLLG KGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEDKKQSYVRHAIREYNIHKTLVHNHIVRLWDIFEIDQNTFCTVLEYCSGKDLDAVLKATPVLPEKEAKI IIVQIFLGLLYLNRRAQKIIHYDLKPGNVLFDEFGAAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGILLYQML FGKRPFGHDQSQEKILREDTIIKARRVEFPSKPTVSNEAKEFIRRCLTYNQMERPDVLTIAQDPYLTYIKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20930		TSL	TOUSLED, Protein kinase superf...		Lus10036170 [exp]	0	1
AT5G13560			unknown protein		Lus10023462 [exp]	2.8	0.8060
					Lus10024018 [exp]	12.1	0.6677
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10034116 [exp]	17.2	0.7581
AT1G02270			Calcium-binding endonuclease/e...		Lus10005145 [exp]	20.0	0.7202
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10003572 [exp]	25.3	0.7851
AT2G37440			DNAse I-like superfamily prote...		Lus10024427 [exp]	30.7	0.7266
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001836 [exp]	34.0	0.7545
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Lus10024130 [exp]	36.1	0.7728
AT1G51690		ATB ALPHA, ATBA...	protein phosphatase 2A 55 kDa ...		Lus10007401 [exp]	37.5	0.7276
AT2G34670			Protein of unknown function (D...		Lus10036155 [exp]	41.3	0.7554

Compare expression of checked genes

Lus10036170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.