Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28310 109 / 3e-28 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G55370 109 / 3e-28 DOF OBP3, AtDof3. 6 OBF-binding protein 3 (.1.2.3) AT1G51700 105 / 7e-28 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT5G60200 106 / 2e-27 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT3G61850 106 / 2e-27 DOF DAG1, AtDof3,7 dof affecting germination 1, Dof-type zinc finger DNA-binding family protein (.1.2.3.4) AT1G07640 106 / 2e-27 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT3G50410 105 / 3e-27 DOF OBP1, AtDof3. 4 OBF binding protein 1 (.1) AT3G45610 104 / 6e-27 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1) AT5G66940 103 / 8e-27 DOF AtDof5. 8 Dof-type zinc finger DNA-binding family protein (.1) AT2G28810 104 / 2e-26 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038310 [exp] 478 / 3e-173 AT3G55370 108 / 9e-28 OBF-binding protein 3 (.1.2.3) Lus10034652 [exp] 108 / 2e-28 AT5G60850 162 / 4e-48 OBF binding protein 4 (.1) Lus10016566 [exp] 109 / 4e-28 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10017882 [exp] 108 / 4e-28 AT5G60850 167 / 3e-50 OBF binding protein 4 (.1) Lus10033218 [exp] 108 / 1e-27 AT1G64620 169 / 7e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10023032 [exp] 108 / 2e-27 AT1G64620 171 / 1e-50 Dof-type zinc finger DNA-binding family protein (.1) Lus10015425 [exp] 104 / 1e-26 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10042114 [exp] 100 / 1e-26 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10003207 [exp] 105 / 2e-26 AT4G24060 159 / 9e-46 Dof-type zinc finger DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047500 [exp] 176 / 7e-54 AT1G07640 106 / 1e-26 Dof-type zinc finger DNA-binding family protein (.1.2.3) Potri.004G038800 [exp] 152 / 7e-45 AT1G51700 104 / 7e-27 DOF zinc finger protein 1 (.1) Potri.004G046600 [exp] 113 / 1e-29 AT1G28310 135 / 6e-37 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.011G055600 [exp] 113 / 2e-29 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2) Potri.012G063800 [exp] 108 / 1e-27 AT5G60850 137 / 9e-38 OBF binding protein 4 (.1) Potri.005G134200 [exp] 108 / 1e-27 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.015G048300 [exp] 107 / 1e-27 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.007G036400 [exp] 106 / 1e-27 AT3G50410 170 / 2e-52 OBF binding protein 1 (.1) Potri.007G038100 [exp] 107 / 2e-27 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.005G131600 [exp] 105 / 2e-27 AT3G50410 126 / 3e-35 OBF binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10036172 pacid=23169364 polypeptide=Lus10036172 locus=Lus10036172.g ID=Lus10036172.BGIv1.0 annot-version=v1.0 ATGGGTTTGAGAACAAAACAAGTTTCCAAAGACTTAGTTCTCGACTGGAGCCAGAGCACCCTAGCTAATCCTCCTCCTCCAAATCAGACGGCTAGAAAGC AACATCAGAAGAATCCCGATCAGAGCCAGAGCCAATCTGAACCGTTGAACTGTCCGAGATGCGACTCCACCAACACCAAATTCTGCTACTTCAACAACTA CAACAAGTCCCAGCCTAGACACTTCTGTAAAGCCTGCAAACGCCATTGGACCAAAGGTGGGACCTTACGGAACGTTCCGGTAGGCGGCGGCCGGAAGAAC AAGCGTTTCTCTAAACCCACCGGCGGCAACAACATCGGTAAGATTATAAACAAGGTCAGTCCCAAAATGGTAATCCAAGCTCAGAGGCCGAAACAGAGCA TCCAAGAAAACAGAGCATGCCCGAACGACGTCGTCTTGCAAGGATTGATGACTAGCTCCCCTCTTCCGCCGCCGGAGATCGGCGTTAACTTCAGCAGCGG CGAAATGGGTTCCTCGATATTCGCTCAAGGTTTGAGCTTTACTTACTCTGCCGCCGGTTTCGAGTTCCCGGGTTCAAGCTCTGCCACGTGGCAAGTGCCC AGTACGATCAGCGACGAGAAGAGCGTGGTGATCAACGACGTCGTAGCGACGACGGCGAACGACGCGTCGTATTGGAATTGGGATGATATGGATAGCTTCG TCTCTGGTGCGGATCTCAACATTCCATGGGATATTGATGATCCCGAGGTTAAACCTTAA
AA sequence Show only first row Show all	>Lus10036172 pacid=23169364 polypeptide=Lus10036172 locus=Lus10036172.g ID=Lus10036172.BGIv1.0 annot-version=v1.0 MGLRTKQVSKDLVLDWSQSTLANPPPPNQTARKQHQKNPDQSQSQSEPLNCPRCDSTNTKFCYFNNYNKSQPRHFCKACKRHWTKGGTLRNVPVGGGRKN KRFSKPTGGNNIGKIINKVSPKMVIQAQRPKQSIQENRACPNDVVLQGLMTSSPLPPPEIGVNFSSGEMGSSIFAQGLSFTYSAAGFEFPGSSSATWQVP STISDEKSVVINDVVATTANDASYWNWDDMDSFVSGADLNIPWDIDDPEVKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10036172 [exp]	0	1
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	1.0	0.9318
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	3.5	0.9080
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10003557 [exp]	3.7	0.9215
AT4G03320		AtTic20-IV, TIC...	translocon at the inner envelo...		Lus10039783 [exp]	4.2	0.9145
AT2G04240		XERICO	RING/U-box superfamily protein...		Lus10019150 [exp]	7.3	0.8773
AT5G56350			Pyruvate kinase family protein...		Lus10013396 [exp]	10.6	0.8887
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	10.7	0.8845
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10018235 [exp]	10.8	0.9014
AT4G19460			UDP-Glycosyltransferase superf...		Lus10034760 [exp]	11.5	0.8729
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	12.4	0.8856

Compare expression of checked genes

Lus10036172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.