Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 99 / 1e-21 unknown protein AT1G11070 92 / 3e-19 unknown protein AT1G61080 88 / 4e-18 Hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038307 [exp] 732 / 0 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 288 / 8e-87 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 276 / 3e-82 AT4G04980 336 / 2e-100 unknown protein Lus10033704 [exp] 76 / 5e-14 AT4G04980 311 / 4e-94 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047100 [exp] 200 / 2e-55 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 198 / 6e-55 AT4G04980 387 / 4e-121 unknown protein Potri.001G317001 [exp] 52 / 6e-07 AT4G04980 320 / 5e-98 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036173 pacid=23169438 polypeptide=Lus10036173 locus=Lus10036173.g ID=Lus10036173.BGIv1.0 annot-version=v1.0 ATGTTCGTCTTGATGACGGACTTACGGAAGAAGATTAACCTCTTCAGGGGAATCTTTGACCTGCCAACTTGTGATGTCTCTGCTTCCATAAACCAACTGG TGACGGATACCATGGGTGATCTCCACAATCTCTACCCTGAAATCATGCCCATCAAAAAATTGTCAGATATCAAGCAAGGAATTTCTGTTCACGAGGTTTT GATTTACCTGTGCGGAGCTTTGAGATCAGTTGGAGACTCCTGGGGGACGACGAATCATGAATGGATGGACGAAGCTACGCTCTACAAACAGAACAACATG GACGAGTTGAGCTCCGAACAGCTAGTTGATCTTGCACTGGCAACACTCAATTGCTTGATCAAGATTCAAACAGAGGATTCCGAAGCGACAGATGAAGAAT ATGATCATAGCAAAGACATTGTACCATATGGGAAGTCGTTGCTAAAATCGTGCTCCGAGAGCAATATTCCATTCAGTGTAGCGTCCCCAGTGAAAACACC TACATCATTTCTTCCGGAAATAAGTTGTGATTCTCCCAAGGCCAAGGAGTTTTCTAACTTGTACTGTTCGTCGCCCCTTCTGAGGTTTTTGAGCTTTCAA TCAGTAGGGAAATTGAGCCGCGTCGACATAAAAAAGCTCCCTTTCCATTTGTTCCCACATGGCATCTCTCATGGCCACCATAAGAACAATGTGAGCAAAC GCCGCGCTGAAGGTAAGCATCCAGATGGGGAACCGATATTGGAAATGGATGGAAGTCAATCCTCGGAAGGTGAAACAGACTCGGATGATGAAACTAGAGA GAGTTCAGTGACTGACACAATTCCCACAACCGTACAAGTCAAGGAATTGGCAATGCTGTCTGAAAAGCCTATGTCTTCAGAATTGGTCTCAGAAGCATCA GTACCTCCCCCACCCCCACCTCCACAACCCCCACCATCAACCACGAGGATAAAGATTCCAAGAGGTTCACAACCCCCCAAACCTCCACCACTGCCTCCTT TGCATCGAGTATCCCAACTCCAGCCATTGGCTCCTGAACCGCCTCTGCCAACTCCAGTTTTGAAGTCTCAAGCAGCTACCGCAAGTATATCATTCCAGCT TTGTCCACATACAAGAGAAGAAACTGAAAAACCATCTTCATTATCAGTGCCACCTCCACCACCACCACCACCACCGCAGCAAAAGACATCAGATTGTGAG AAACCAACCTCATCACGTTCATCATCTCTACGTATTCCAAGAACCACACAAGCAATGCACTCTTCACCAAGTCTTCCAAGGACATCTTCAAATGGGTCAG CCTCAAATTGTCCCCTTCACTTGATTGTTCTTCCTATGTATCCCCTTCACTTGATTGTTCTTCCTATGTATCCCCTTCACTTGATTGTTCTTCCTATGTA TCCCCTTCACTTGATTGTTCTTCCTATGTATCCCCTTCACTTGATTGTTCTTCCTATGTATCCCCTTCACTTGATTGTTCTTCCTATGTATCCCCTTCAC TTGATTGTTCTTCCTATGTATCCCCTTCACTTGATTGTTCTTCCTATCATAGATCAGCATACTTCCAACAAATTCAAGAAGACGTGCAAACCTATGAAGA GGAAATAA
AA sequence Show only first row Show all	>Lus10036173 pacid=23169438 polypeptide=Lus10036173 locus=Lus10036173.g ID=Lus10036173.BGIv1.0 annot-version=v1.0 MFVLMTDLRKKINLFRGIFDLPTCDVSASINQLVTDTMGDLHNLYPEIMPIKKLSDIKQGISVHEVLIYLCGALRSVGDSWGTTNHEWMDEATLYKQNNM DELSSEQLVDLALATLNCLIKIQTEDSEATDEEYDHSKDIVPYGKSLLKSCSESNIPFSVASPVKTPTSFLPEISCDSPKAKEFSNLYCSSPLLRFLSFQ SVGKLSRVDIKKLPFHLFPHGISHGHHKNNVSKRRAEGKHPDGEPILEMDGSQSSEGETDSDDETRESSVTDTIPTTVQVKELAMLSEKPMSSELVSEAS VPPPPPPPQPPPSTTRIKIPRGSQPPKPPPLPPLHRVSQLQPLAPEPPLPTPVLKSQAATASISFQLCPHTREETEKPSSLSVPPPPPPPPPQQKTSDCE KPTSSRSSSLRIPRTTQAMHSSPSLPRTSSNGSASNCPLHLIVLPMYPLHLIVLPMYPLHLIVLPMYPLHLIVLPMYPLHLIVLPMYPLHLIVLPMYPLH LIVLPMYPLHLIVLPIIDQHTSNKFKKTCKPMKRK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10036173 [exp]	0	1
AT2G04480			unknown protein		Lus10001750 [exp]	1.0	0.9085
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10001465 [exp]	2.8	0.8060
AT1G09030	CCAAT	NF-YB4	"nuclear factor Y, subunit B4"...		Lus10029908 [exp]	6.9	0.7554
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10017777 [exp]	7.4	0.7762
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	7.9	0.7664
AT5G19410		ABCG23	ATP-binding cassette G23, ABC-...		Lus10033637 [exp]	11.0	0.7978
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	11.8	0.7941
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	15.0	0.7720
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10024689 [exp]	15.3	0.7604
AT5G46060			Protein of unknown function, D...		Lus10000133 [exp]	18.7	0.7746

Compare expression of checked genes

Lus10036173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.