Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04980 236 / 6e-73 unknown protein AT1G11070 217 / 2e-66 unknown protein AT1G61080 199 / 2e-59 Hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 62 / 2e-11 unknown protein AT4G18570 58 / 5e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G48280 48 / 1e-06 hydroxyproline-rich glycoprotein family protein (.1) AT3G25690 47 / 3e-06 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038307 [exp] 397 / 5e-134 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 333 / 6e-109 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 325 / 8e-106 AT4G04980 336 / 2e-100 unknown protein Lus10031636 [exp] 211 / 1e-64 AT4G04980 313 / 3e-95 unknown protein Lus10033704 [exp] 209 / 7e-64 AT4G04980 311 / 4e-94 unknown protein Lus10015292 [exp] 67 / 6e-13 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 66 / 2e-12 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000986 [exp] 62 / 2e-11 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013931 [exp] 62 / 3e-11 AT4G18570 321 / 5e-102 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G047100 [exp] 277 / 3e-88 AT4G04980 358 / 1e-109 unknown protein Potri.004G038400 [exp] 266 / 2e-84 AT4G04980 387 / 4e-121 unknown protein Potri.001G317001 [exp] 224 / 4e-70 AT4G04980 320 / 5e-98 unknown protein Potri.009G073600 [exp] 61 / 5e-11 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 57 / 8e-10 AT1G07120 440 / 2e-153 unknown protein Potri.004G054900 [exp] 56 / 3e-09 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G064500 [exp] 53 / 4e-08 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G156500 [exp] 52 / 7e-08 AT3G25690 338 / 2e-103 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.001G460300 [exp] 50 / 3e-07 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.010G130800 [exp] 47 / 3e-06 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036174 pacid=23169423 polypeptide=Lus10036174 locus=Lus10036174.g ID=Lus10036174.BGIv1.0 annot-version=v1.0 ATGACAGAGTTAGTCAACTTCTACAAGTATGTCGAGTCCGTTCTCGAGAATCTAACTGATGAATCACAGGTCCTAGCGAGGTTTGAAGGCTTCCCTCAAA AGAAGTTGGAAGTAACAAGGTCAGCAGCAGCACTCTACTGTAAACTAAAAGGAGTTGTTACTGACCTACAGGCATGGAAGATCGAATCCCCATTGGAACG GCTTCTCGACAGGATCGAGCGATACTTCAGCAAGATGAACGGAGAGCTGGATGCATTCGAGAGAATTAAAGAAGAAGAATGCAAGAAGTACAAGAACCAT AACATCGAGTTCGACCTGCAGATCCTAGTACAGATCAAAGAAGCCGTGGTGGATCTTTCATCGAATTGCATGGAATTAGCCATGAAAGAAAGAAGAGATG CTGAGAAAAGCGGAGCTCAACCTAGCAAGGCGTGTTGTAAGACGCTGTGGAGAGTGTTTCAATTCGCGTTCAGAGTGTATACCTTCGCCGGGGGACACGA TGACCGCGCCGATAGACTGACGAGGGAATTGGCTAAGCAAATCGAGGAAGATTATCGTCGGATGCAAGAAAATCATCTGTAA
AA sequence Show only first row Show all	>Lus10036174 pacid=23169423 polypeptide=Lus10036174 locus=Lus10036174.g ID=Lus10036174.BGIv1.0 annot-version=v1.0 MTELVNFYKYVESVLENLTDESQVLARFEGFPQKKLEVTRSAAALYCKLKGVVTDLQAWKIESPLERLLDRIERYFSKMNGELDAFERIKEEECKKYKNH NIEFDLQILVQIKEAVVDLSSNCMELAMKERRDAEKSGAQPSKACCKTLWRVFQFAFRVYTFAGGHDDRADRLTRELAKQIEEDYRRMQENHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04980			unknown protein		Lus10036174 [exp]	0	1
AT1G23790			Plant protein of unknown funct...		Lus10041407 [exp]	14.2	0.8176
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010509 [exp]	23.4	0.8460
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10010511 [exp]	27.1	0.8379
AT3G26590			MATE efflux family protein (.1...		Lus10036854 [exp]	27.9	0.8448
AT2G28670		ESB1	ENHANCED SUBERIN 1, Disease re...		Lus10029585 [exp]	29.1	0.8453
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	34.2	0.8400
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10020997 [exp]	35.7	0.8034
AT3G60480			unknown protein		Lus10000560 [exp]	38.3	0.7820
					Lus10002087 [exp]	41.4	0.8358
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	44.7	0.7746

Compare expression of checked genes

Lus10036174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.