Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68810 74 / 5e-16 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 74 / 5e-16 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT3G56770 63 / 2e-12 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G41130 63 / 4e-12 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G40200 61 / 1e-11 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038306 [exp] 293 / 8e-102 AT3G56770 102 / 2e-26 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10013917 [exp] 114 / 3e-31 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 99 / 9e-26 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 74 / 7e-16 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021711 [exp] 74 / 1e-15 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 68 / 1e-13 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 67 / 2e-13 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10018020 [exp] 65 / 7e-13 AT2G41130 206 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 61 / 1e-11 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G089000 [exp] 184 / 7e-59 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G117600 [exp] 161 / 1e-49 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.011G065500 [exp] 128 / 3e-37 AT1G68810 113 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G055700 [exp] 122 / 8e-35 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 84 / 2e-19 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 81 / 2e-18 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 78 / 8e-18 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 70 / 1e-14 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 69 / 2e-14 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G037100 [exp] 65 / 4e-13 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036175 pacid=23169437 polypeptide=Lus10036175 locus=Lus10036175.g ID=Lus10036175.BGIv1.0 annot-version=v1.0 ATGCAGATAGACAAGGCATCACTGCTGGCAGAGGTTGTGAGTAATTTAAAAGAACTGAAAAGAAATGCCGCTGAAGCTAGTGAAGGTATTTTTATGCCAA TGGACGTTGATGAACTAAAAGTTGAACAGGAATTGGAGGGACCTCCATATTTGATCAAGGCATCTTTGTGTTGCAATTTTAAGCCTGGGATTTTATCTCA TCTCAAAACTGCAATTGAAACTCTTCAGCTGAGTTTAATGCGGGCAGAGACTGCTACCTTGGAAGGTAGGATGAAGAATGTTTTTGTGATAGCGAGTCGA AGACAAGAAGAACACCATGAGCATACTAACAAGGGGCATCATCAACTGCTGGAAAGTTCTGTTCATCATGCTTTCAGAACCATACTGAATAATTTTTCAG CTTCGGAGGAGTTCTTACTGAAATCAGCACTCCCGAACAAGAAACGAAGAATTTCTGTGTTTGATGGTTCCTTTTCAGTGTCGTCTGGAGACCCCCCGGT GAGCCTTTGA
AA sequence Show only first row Show all	>Lus10036175 pacid=23169437 polypeptide=Lus10036175 locus=Lus10036175.g ID=Lus10036175.BGIv1.0 annot-version=v1.0 MQIDKASLLAEVVSNLKELKRNAAEASEGIFMPMDVDELKVEQELEGPPYLIKASLCCNFKPGILSHLKTAIETLQLSLMRAETATLEGRMKNVFVIASR RQEEHHEHTNKGHHQLLESSVHHAFRTILNNFSASEEFLLKSALPNKKRRISVFDGSFSVSSGDPPVSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25710	bHLH	TMO5, BHLH32, b...	TARGET OF MONOPTEROS 5, basic ...		Lus10036175 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	7.1	0.7698
AT3G26740		CCL	CCR-like (.1)		Lus10041522 [exp]	7.9	0.8083
AT2G45330		TRPT, EMB1067	2' tRNA phosphotransferase, em...		Lus10015875 [exp]	8.1	0.7093
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005632 [exp]	11.1	0.8005
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	15.5	0.7666
					Lus10006725 [exp]	17.3	0.7124
AT4G03230			S-locus lectin protein kinase ...		Lus10012956 [exp]	17.7	0.7799
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	19.2	0.6809
AT5G39670			Calcium-binding EF-hand family...		Lus10026301 [exp]	23.6	0.7796
AT2G17580			Polynucleotide adenylyltransfe...		Lus10035995 [exp]	31.4	0.7046

Compare expression of checked genes

Lus10036175 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.