Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08370 521 / 0 ATAGAL2 alpha-galactosidase 2 (.1.2) AT5G08380 492 / 3e-174 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 466 / 1e-163 Melibiase family protein (.1.2) AT3G26380 101 / 5e-23 Melibiase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038305 [exp] 697 / 0 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 523 / 0 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 493 / 5e-175 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 475 / 7e-168 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018260 [exp] 468 / 5e-165 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10010160 [exp] 467 / 1e-164 AT5G08380 581 / 0.0 alpha-galactosidase 1 (.1) Lus10029046 [exp] 462 / 2e-162 AT3G56310 650 / 0.0 Melibiase family protein (.1.2) Lus10034218 [exp] 462 / 1e-161 AT3G56310 646 / 0.0 Melibiase family protein (.1.2) Lus10017365 [exp] 392 / 4e-135 AT5G08380 501 / 9e-178 alpha-galactosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G038100 [exp] 654 / 0 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 518 / 0 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G118200 [exp] 509 / 0 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 490 / 2e-173 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.019G056700 [exp] 467 / 4e-164 AT3G56310 681 / 0.0 Melibiase family protein (.1.2) Potri.008G185300 [exp] 90 / 2e-19 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 88 / 8e-19 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 85 / 1e-17 AT3G26380 815 / 0.0 Melibiase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10036176 pacid=23169335 polypeptide=Lus10036176 locus=Lus10036176.g ID=Lus10036176.BGIv1.0 annot-version=v1.0 ATGAGTTCAATGAATGTCAGCTATGGCAACCAGCATATGGAGGAATATAGGCAGTTCCTCCTTGCTAATGGCGTTGCTCTTACACCTCCAATGGGCTGGA ATAGCTGGAACCATTTTCAGTGCAATGTTGATGAACACATGGTAAAATCCACTGCTGATGCACTGGTTTCAACTGGTTTGGCAGCACAAGGTTACAGATA CGTCAACATTGATGATTGCTGGGGAGAACACAAAAGAGACAGCAATGGCAACATGAGAGCAAACTCATCTACTTTCCCTTCTGGGATAAAGGCCCTTTCT GATTATGTCCATTCCAAAGGTCTAAAACTTGGCATCTATTCTGATGCTGGATTCAGAACCTGCAGCAAGAAAATGCCAGGCTCTCTTCATCATGAGGAGC AAGATGCCAGAACTTTTGCTGAATGGGGTATTGACTACTTGAAGTATGATAACTGCTACCACGATGGCTCCAAACCTCATATCAGATATGCTAAGATGAG TTCTGCTCTTCTCAAGGTTGGCCGACCAATACTTTACTCCATATGTGAATGGGGACAAGAAGACCCTGCGAAATGGGCTGGCCGATATGGTAACGCTTGG AGAACTACCGGGGATATCAACGACACTTGGGCAAGTATGATATCAAATGCGGATCAAAACAACATCTGGGGGAGATATGCAGGGCCAGGGAGATGGAATG ATCCTGATATGTTGGAAGTAGGAAATGGAGGGATGAGCTTGGAGGAATACCGTTCCCATTTCAGTATATGGTCACTAATGAAAGCTCCATTGCTCATTGG TTGCGATGTTCGAACGGCAAGTAAAGGGACACTCAGTATTCTCGGGAACAAGGAGGTGATAGAGGTGAATCAAGATCCTCTTGGAGTTCAAGGGAGGAAA ATCAGATCAAAAGCAGGCCTTGAGATATGGGCAGGGCCATTGTCAAGAAAAAGGATGGCAGTAGTGCTCTGGAACAGGAGCAAGTCCAAGGCTATAATCT CAGTCAGGTGGAGGGAAATTGGGGTTTCTCCAGAGACTCCACTCACTGTTAGGAACTTGTGGGCTCATAAGTTTGTGACAATGGGTAAGAAATATGGAAT GGCCGCACGTGTGGCTCCCCACGCTTGCAAGATGTTCATCCTCAGCCCACTAAAATGA
AA sequence Show only first row Show all	>Lus10036176 pacid=23169335 polypeptide=Lus10036176 locus=Lus10036176.g ID=Lus10036176.BGIv1.0 annot-version=v1.0 MSSMNVSYGNQHMEEYRQFLLANGVALTPPMGWNSWNHFQCNVDEHMVKSTADALVSTGLAAQGYRYVNIDDCWGEHKRDSNGNMRANSSTFPSGIKALS DYVHSKGLKLGIYSDAGFRTCSKKMPGSLHHEEQDARTFAEWGIDYLKYDNCYHDGSKPHIRYAKMSSALLKVGRPILYSICEWGQEDPAKWAGRYGNAW RTTGDINDTWASMISNADQNNIWGRYAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWSLMKAPLLIGCDVRTASKGTLSILGNKEVIEVNQDPLGVQGRK IRSKAGLEIWAGPLSRKRMAVVLWNRSKSKAIISVRWREIGVSPETPLTVRNLWAHKFVTMGKKYGMAARVAPHACKMFILSPLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10036176 [exp]	0	1
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10028499 [exp]	6.5	0.7291
AT5G26910			unknown protein		Lus10020689 [exp]	6.5	0.7924
AT5G13120		Pnsl5, ATCYP20-...	Photosynthetic NDH subcomplex...		Lus10003138 [exp]	9.2	0.7643
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10039254 [exp]	9.7	0.8168
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	15.1	0.7852
AT5G06770	C3HZnF		KH domain-containing protein /...		Lus10021043 [exp]	18.8	0.7857
AT3G44160			Outer membrane OMP85 family pr...		Lus10013360 [exp]	19.8	0.7893
AT3G52170			DNA binding (.1.2)		Lus10017453 [exp]	21.2	0.7867
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Lus10012512 [exp]	23.4	0.7777
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10029283 [exp]	23.5	0.7105

Compare expression of checked genes

Lus10036176 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.