Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) AT3G51000 182 / 2e-55 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 182 / 3e-55 alpha/beta-Hydrolases superfamily protein (.1) AT4G15960 172 / 1e-50 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 155 / 9e-45 ATSEH soluble epoxide hydrolase (.1) AT2G26750 151 / 3e-43 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 146 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT4G12830 63 / 5e-11 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 50 / 7e-07 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G14260 49 / 3e-06 PIP proline iminopeptidase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038312 [exp] 617 / 0 AT4G02340 202 / 4e-63 alpha/beta-Hydrolases superfamily protein (.1) Lus10018477 [exp] 452 / 3e-161 AT4G02340 181 / 6e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10039814 [exp] 379 / 3e-132 AT4G02340 216 / 3e-68 alpha/beta-Hydrolases superfamily protein (.1) Lus10001210 [exp] 377 / 1e-131 AT4G02340 189 / 5e-58 alpha/beta-Hydrolases superfamily protein (.1) Lus10011202 [exp] 370 / 8e-129 AT4G02340 206 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) Lus10005858 [exp] 366 / 3e-127 AT4G02340 192 / 3e-59 alpha/beta-Hydrolases superfamily protein (.1) Lus10011204 [exp] 347 / 1e-119 AT4G02340 181 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 207 / 6e-65 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 200 / 5e-62 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G048000 [exp] 396 / 4e-139 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134800 [exp] 392 / 1e-137 AT4G02340 175 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G134900 [exp] 367 / 8e-128 AT4G02340 209 / 8e-66 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G039700 [exp] 331 / 1e-113 AT3G51000 203 / 2e-63 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 201 / 2e-62 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 197 / 5e-61 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 187 / 2e-57 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 177 / 5e-53 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 173 / 9e-52 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 162 / 2e-47 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10036177 pacid=23169366 polypeptide=Lus10036177 locus=Lus10036177.g ID=Lus10036177.BGIv1.0 annot-version=v1.0 ATGGAGACGATTCAGCACAAATTTGTCCAAGTTGAAGGAGGGTTGAAGCTCCATGTAGCTGACATTGGATCAGGTGATAAAGTCGTCCTCTTTCTACACG GATTCCCCGAAATCTGGTACTCATGGCGGCACCAGATGCTGGCACTGTCTAGTTCCGGCCACCGAGCCATAGCCGTTGACTACAGGGGATTCGGGTTGTC GGATCACCCGCCTAAGGTTGAAGACGCCAACTACGTCAACATTGTGGCTGACCTTGTCGCCATCCTCGATTCCCTTGCCATTCCTAAGGTGGTGCTCATA GGGAAAGACTGGGGAGCATTCGTGGCTTCGTGGTTCGGGGTCCTTCACCCGGACAGGGTATCCGGGATAGTGACGTTGGGGATTCCGTTGGCCATCCCAG GGAGTTTCCTTGCCGGGTTTACTGTGCCGGAAGGTGTCTATACTTCAAGATGGGGGGAACCGGGTCGAGCAGAAGCAGATTTCGGGCGGCTAGATGCTAA GATGGTGATACGAAATGTGTACATACTCTTTTCGGGAAGTGATATGCCAACCGCTGCCGAGAACCAGGAAATCATGGATTTGGTGGACCCATCAACTCCA CTTCCTCCTTGGTTCTCCGAGAAAGATCTATCGGCTTATGGTGCCTTGTACCAGAAGTCAGGGTTTCAGTTTGCCCTTCAGATCCCCTACAGATCGTTCC AACTGAAGCTGGACATGCCAAAAACAGAGCAAAAGCTTAACATGCCGGCTTTACTGATCATGGGAGCCAAAGATTACTGCCTGAAGTTTCCAGGAATTGA AGATTACATCCTAAATGATGCTTCTATGAAGGAGTTCGTTCCCGATTTGGAAACCGTGTTCATGGACGAAGGGAACGATTTCGTCCAAGAACAACTCCCT GAACAAGTGAACGGGCTTATCCTCGGATTCCTCGAAGCTCGAATCTCGCCATGA
AA sequence Show only first row Show all	>Lus10036177 pacid=23169366 polypeptide=Lus10036177 locus=Lus10036177.g ID=Lus10036177.BGIv1.0 annot-version=v1.0 METIQHKFVQVEGGLKLHVADIGSGDKVVLFLHGFPEIWYSWRHQMLALSSSGHRAIAVDYRGFGLSDHPPKVEDANYVNIVADLVAILDSLAIPKVVLI GKDWGAFVASWFGVLHPDRVSGIVTLGIPLAIPGSFLAGFTVPEGVYTSRWGEPGRAEADFGRLDAKMVIRNVYILFSGSDMPTAAENQEIMDLVDPSTP LPPWFSEKDLSAYGALYQKSGFQFALQIPYRSFQLKLDMPKTEQKLNMPALLIMGAKDYCLKFPGIEDYILNDASMKEFVPDLETVFMDEGNDFVQEQLP EQVNGLILGFLEARISP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	1.0	0.9731
AT2G28160	bHLH	ATFIT1, ATBHLH2...	ARABIDOPSIS FE-DEFICIENCY INDU...		Lus10016151 [exp]	2.0	0.9666
AT1G17710		AtPEPC1	Arabidopsis thaliana phosphoet...		Lus10015634 [exp]	3.0	0.9603
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	3.9	0.9654
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	4.9	0.9564
AT5G62130			Per1-like family protein (.1.2...		Lus10031658 [exp]	6.2	0.9299
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	6.8	0.9690
AT5G17820			Peroxidase superfamily protein...		Lus10018375 [exp]	7.1	0.9435
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029639 [exp]	7.2	0.9428
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	7.7	0.9674

Compare expression of checked genes

Lus10036177 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.