Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58770 306 / 7e-103 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58782 251 / 1e-81 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58784 248 / 3e-80 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G58780 240 / 4e-77 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G23410 236 / 1e-75 ACPT cis-prenyltransferase (.1) AT2G23400 199 / 6e-62 Undecaprenyl pyrophosphate synthetase family protein (.1) AT2G17570 140 / 7e-39 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60510 116 / 5e-30 Undecaprenyl pyrophosphate synthetase family protein (.1) AT5G60500 114 / 4e-29 Undecaprenyl pyrophosphate synthetase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038313 [exp] 484 / 3e-173 AT5G58770 351 / 8e-122 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10032757 [exp] 129 / 2e-34 AT2G17570 344 / 1e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10002788 [exp] 129 / 2e-34 AT2G17570 342 / 9e-119 Undecaprenyl pyrophosphate synthetase family protein (.1) Lus10005789 [exp] 127 / 5e-33 AT2G17570 316 / 2e-107 Undecaprenyl pyrophosphate synthetase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G045500 [exp] 338 / 3e-115 AT5G58770 325 / 1e-111 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G250900 [exp] 323 / 1e-109 AT5G58770 313 / 1e-106 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.001G312700 [exp] 317 / 3e-107 AT5G58770 294 / 2e-99 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.005G100800 [exp] 89 / 2e-19 AT2G17570 243 / 2e-78 Undecaprenyl pyrophosphate synthetase family protein (.1) Potri.002G039400 [exp] 81 / 3e-17 AT2G17570 259 / 1e-86 Undecaprenyl pyrophosphate synthetase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01255 [flax] [poplar] Prenyltransf Putative undecaprenyl diphosphate synthase
Representative CDS sequence Show only first row Show all	>Lus10036178 pacid=23169410 polypeptide=Lus10036178 locus=Lus10036178.g ID=Lus10036178.BGIv1.0 annot-version=v1.0 ATGACACCACCGATGCACCCTACCTTCTGGAACCCCACCATCGCTGCCACCGCCAAGACCATCGTCTCCACCAGCACCACACTCGTCTCTCTATCGCAGC CAGTCAGATTTGCGCAATCGCAAAACCCATCTAACCCTAGTTACGTTGTCATCACCAACAATCAAGCCATCAACCTCATTGATCAATCACTTGATAAAAT CCCACGTTGCCGATCTGCTCGTAGCAGAAATCATTTCAAGAAGATCGAAGAAGGAAACCCAATTACTATGCTCTCCCTACACTACTTCCCCAACCGAATC CCTGAACAGAAATGTTCTACTGCGGCGGCGGCGGGGACATCATCCGGCCAGCTCCGGCGGCGGCAAGTGGCGGCGAAAGCGTGGCAGTTGGAGAAGATGA AGAAGAAGAACAAGGAGCTTCCGGAAGGGCTGAGGGAAGATCTGATTCCGAGACACGTGGCGGTGATAATGGACGGTAACGGCAGGTGGGCGAAGCAGAG AGGGCTTGTCACCGGAGCAGGACATGAGGCTGGAGTACGGTCGTTGAAGGAGATGGTGCGGCTTTGCATTCAGTGGGGGATTAGTGTTTTAACAGTGTTT GCTTTCTCCACCGATAACTGGATTCGGCCTAAGGTGGAGGTTGATTTCCTGATGAGTTTGTTTGAAAGAGCGCTAAGAACAGAGTTGGAAGATATTGCAA GGCAAGGAGTGCGCATCTCAGTGATAGGAGACTCATCAAAGCTCTCGGATTCCTTACTCAAGCTCATACACGACGTGGAAGAGAAGACCAAGGACAACTC CAACCTCCACCTCATGGTGGCCGTAAGCTACAGCGGCAAATACGACGTTGTGCAGGCGTGCCAGAGCATCGCCCGTCAGGTGAAAGACGGGGTCATAGAG CTCGACGACATAAACGAGAGCTTGATCGAGAAGGAGTTGGAGACCAAGCGCACAAAGTTCCCTAGCCCGGACCTTTTGATTCGGACCAGTGGAGAGCTCA GGATCAGTAACTTCTTGTTGTGGCAGCTGGCTTACACCGAACTCTACTTCGCCGAACCTCTTTGGCCCGATTTCGGCGAGGAAGAATTCGCCCAGGCCTT GCTTTCGTTCCAGCAGAGGCAGCGTCGGTTCGGTTCTAGGAAGTGA
AA sequence Show only first row Show all	>Lus10036178 pacid=23169410 polypeptide=Lus10036178 locus=Lus10036178.g ID=Lus10036178.BGIv1.0 annot-version=v1.0 MTPPMHPTFWNPTIAATAKTIVSTSTTLVSLSQPVRFAQSQNPSNPSYVVITNNQAINLIDQSLDKIPRCRSARSRNHFKKIEEGNPITMLSLHYFPNRI PEQKCSTAAAAGTSSGQLRRRQVAAKAWQLEKMKKKNKELPEGLREDLIPRHVAVIMDGNGRWAKQRGLVTGAGHEAGVRSLKEMVRLCIQWGISVLTVF AFSTDNWIRPKVEVDFLMSLFERALRTELEDIARQGVRISVIGDSSKLSDSLLKLIHDVEEKTKDNSNLHLMVAVSYSGKYDVVQACQSIARQVKDGVIE LDDINESLIEKELETKRTKFPSPDLLIRTSGELRISNFLLWQLAYTELYFAEPLWPDFGEEEFAQALLSFQQRQRRFGSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10036178 [exp]	0	1
AT5G43850		ATARD4	RmlC-like cupins superfamily p...		Lus10021902 [exp]	1.0	0.9506
AT5G58770			Undecaprenyl pyrophosphate syn...		Lus10038313 [exp]	1.4	0.9179
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10000310 [exp]	1.7	0.9165
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10002138 [exp]	5.8	0.8529
AT1G64500			Glutaredoxin family protein (....		Lus10003194 [exp]	6.3	0.8916
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10003143 [exp]	6.3	0.9081
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Lus10038203 [exp]	7.7	0.8631
AT4G33860			Glycosyl hydrolase family 10 p...		Lus10033786 [exp]	8.8	0.8857
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006307 [exp]	9.5	0.8614
AT2G28780			unknown protein		Lus10024409 [exp]	10.2	0.8783

Compare expression of checked genes

Lus10036178 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.