Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01410 511 / 0 PDX1, ATPDX1.3, RSR4 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) AT2G38230 480 / 2e-172 ATPDX1.1 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.1, pyridoxine biosynthesis 1.1 (.1) AT3G16050 353 / 3e-122 A37, ATPDX1.2 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) AT2G38210 122 / 5e-35 PDX1L4 putative PDX1-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038318 [exp] 566 / 0 AT5G01410 578 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10004812 [exp] 517 / 0 AT5G01410 592 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10002486 [exp] 335 / 2e-116 AT5G01410 395 / 1e-140 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Lus10011450 [exp] 288 / 1e-97 AT3G16050 372 / 9e-131 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1) Lus10037545 [exp] 280 / 3e-94 AT3G16050 370 / 5e-130 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G100500 [exp] 511 / 0 AT5G01410 538 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.016G116400 [exp] 507 / 0 AT5G01410 532 / 0.0 REDUCED SUGAR RESPONSE 4, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.3, Aldolase-type TIM barrel family protein (.1) Potri.001G182100 [exp] 370 / 3e-129 AT3G16050 483 / 9e-174 ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, pyridoxine biosynthesis 1.2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01680 [flax] [poplar] SOR_SNZ SOR/SNZ family
Representative CDS sequence Show only first row Show all	>Lus10036181 pacid=23169383 polypeptide=Lus10036181 locus=Lus10036181.g ID=Lus10036181.BGIv1.0 annot-version=v1.0 ATGGCGGACAGCGGCGTAGTCACCGTCTACGGAAACGCCGCCCTCTACGAACCAACGACGAAGAAATCCACCTTCTCCGTGAAGGTTGGCCTCGCCCAAA TGCTCCGCGGCGGGGTCATCATGGACGTCGTCAACGCCGACCAAGCCAGGATCGCCGAGGAGGCCGGAGCCTGCGCCGTCATGGCTCTTGCGCGAATCCC CGCCGACATCCGATCCCAAGGAGGCGTCGCCAGGATGAGCGATCCTCAATTGATCAAGGAAATCAAGCAATCCGTCACCATCCCTGTCATGGCCAAGGCC CGAATCGGCCATTTCGTCGAGGCTCAGATCCTGGAAGCACTCGGAATCGACTACATCGACGAGAGTGAGGTACTTACACTAGCTGACGAGGACAACCACA TCAACAAACACAATTTCCGGATCCCGTTCGTCTGCGGATGCAGGAACCTGGGCGAAGCCCTGCGGCGGATCCGCGAAGGCGCGGCGATGATCAGGACTAA AGGAGAGGCCGGAACTGGAAACGTGATTGAAGCCGTGAGGCATGTGAGGTCGGTGATGGGGGACATTAGGGTTCTGAGGAACATGGATGATGATGAGGGG GTCACTTTCGCTAAGAAGATTGCTGCGCCTTACGATCTGGTGATGCAGACCAAACAGCTCGGGAGGCTGCCGGTGGTCCCATTCGCCGCTGGAGGAGTGG CGACTCCGGCAGATGCGGCGATGATGATGCAGCTGGGTTGCGACGGTGTGTTCGTCGGATCTGGAGTTTTCAAGAGTGGTGATCCGGCGAGGAGGGCGAG GGCAATTGTGCAGGCGGTTACTCATTACACTGATCCGGAAGTGCTTGCGGAGGTGAGCTGTGGATTGGGTGAGGCCATGGTTGGGATCAATCTGAACGAT CCGAATGTCGAGAGGTATGCTAATCGGTCGGAGTAA
AA sequence Show only first row Show all	>Lus10036181 pacid=23169383 polypeptide=Lus10036181 locus=Lus10036181.g ID=Lus10036181.BGIv1.0 annot-version=v1.0 MADSGVVTVYGNAALYEPTTKKSTFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMALARIPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKA RIGHFVEAQILEALGIDYIDESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRHVRSVMGDIRVLRNMDDDEG VTFAKKIAAPYDLVMQTKQLGRLPVVPFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYTDPEVLAEVSCGLGEAMVGINLND PNVERYANRSE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Lus10036181 [exp]	0	1
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	1.0	0.9128
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031819 [exp]	4.2	0.9049
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	5.5	0.9062
AT1G65720			unknown protein		Lus10031363 [exp]	6.2	0.9089
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	6.6	0.9095
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	8.2	0.9073
AT5G44060			unknown protein		Lus10011797 [exp]	10.2	0.8711
AT5G42200			RING/U-box superfamily protein...		Lus10005617 [exp]	11.0	0.8792
AT5G57460			unknown protein		Lus10000167 [exp]	12.1	0.9007
AT1G11360			Adenine nucleotide alpha hydro...		Lus10037867 [exp]	13.4	0.8887

Compare expression of checked genes

Lus10036181 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.