Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29970 497 / 9e-161 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G07200 492 / 3e-159 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G57710 220 / 3e-59 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT2G40130 185 / 3e-50 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G30350 142 / 1e-34 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G52490 69 / 1e-11 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G50920 65 / 2e-10 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT5G15450 62 / 2e-09 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT3G48870 62 / 2e-09 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 59 / 2e-08 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038320 [exp] 1566 / 0 AT2G29970 696 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040206 [exp] 405 / 4e-125 AT2G40130 569 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10028281 [exp] 389 / 9e-121 AT1G07200 407 / 3e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10015511 [exp] 215 / 1e-57 AT5G57710 899 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10019984 [exp] 138 / 5e-33 AT5G57710 912 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008902 [exp] 137 / 6e-33 AT5G57710 392 / 3e-124 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023201 [exp] 125 / 5e-29 AT5G57710 404 / 1e-127 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10021291 [exp] 69 / 2e-11 AT3G52490 690 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016966 [exp] 65 / 2e-10 AT3G52490 606 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252500 [exp] 641 / 0 AT2G29970 668 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G188200 [exp] 511 / 2e-164 AT1G07200 624 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G046700 [exp] 369 / 1e-111 AT2G29970 658 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.008G069100 [exp] 269 / 1e-75 AT2G29970 610 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G175200 [exp] 194 / 6e-51 AT5G57710 913 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.018G097300 [exp] 190 / 2e-49 AT5G57710 998 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G071800 [exp] 74 / 3e-13 AT3G52490 785 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G241600 [exp] 69 / 9e-12 AT3G52490 641 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G204500 [exp] 67 / 6e-11 AT3G52490 852 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G073800 [exp] 66 / 1e-10 AT4G29920 693 / 0.0 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Lus10036183 pacid=23169318 polypeptide=Lus10036183 locus=Lus10036183.g ID=Lus10036183.BGIv1.0 annot-version=v1.0 ATGGCTGCAATCAAGAGATCTCAGGCAAATCAGCGCCGCCACCCGGATAGCTTCCACCTGCAGCAGATTCACTTCGGGAACCAGGCTCCCGCCGTGATTA AAGTGGAGCTTAAGCACTTCATCGGGTCGATTTTGGATGACCCGGTTGTCAGTCGGGTCTTCGGTGAAGCTGGATTCATCAGCTGCCGGATCAAATCTGT AATTCTCAGTCCGCCTTTACTTCTTCAGACCCCAAGATTCCCTCGTGCTGGATTGCTCCCGCCCTCCTTCTTTTCACGGAATCTCGGCTCTTCGGATCCC GGGTTCGGATTCGGGTTCTCGTTTTCCGACGACGGAGCTGAGAATTCCCGGAGAATCGGGGAAGTGATGGTGAAACAAGAAGGGAAAGGGAAGAATCCAT TGCTCCTCGGTGCTTGTGCGAGCGACGCGCTCAAGAGATTCGTTGAGCGCGTAAAGTACAATAGTACAGGCAACAGTATCGGCGGCGGAGGAAGCTCGCT GCCAAATGAAATCGCCGGGATATCCGTGGTTGTTATCGAATCCGACAAGGAGGAAGCGGGTCAGAAGTTTGACGAGCTGGGTCGGGCACTGGAAGCGTGT TCGGGTCGGGGAATCGTCGCCAGTTTCGGCGATTTAGAAGTTCTCATCGGCGGAGATGATGATGATACTGCTGGGAGCTACATGGTTTCCAAATTGACGA CGCTTCTGGAAAGGTTCAAAGAGAAGCTATGGCTGATCGGAGCTGCGGCGAGCTACGATGTATACAGCAAGTTCTTGAAGCGGTTTCCCGCCGTTGAAAA AGATTGGGATCTCCAGCTCTTGCCCATTACTTCTTCTTCGAGCTCCGTCTCTGGATTGGGTTCCAAATCCAGCTTATTGGGATCTTTTGTTCCATTTGGT GGGTTTTTCCCAACGACATCTGATTTGCCAAGTCCATTAAGCAGCATGAGTGAGCCACTGGGTCGTTGCCATCTTTGCACAGCCAAGTATGAGCAAGAAG TTGCGGCTCTTCTCAAGACTGCACACCAACGCTCAGATAACTTGCCTTGGTTAACAATGGCTGAACAGATTAAAGGCAAAGGGGTTGATGAAGCATCAAA GATTGAAGATGATGGATCTATTGTTGCGCTACAGAAGAAATGGAATGATATATGTCAACGGCTTCATCGTTCTCAGACATTCTCCAAATTGGATACCTCT CCCAGTCCCAAGTACCAGGCTTTAGTAGCTGAAGATTCATCCACAAGTATTGGTGGTTTCAACGGAATTCAAAATCTATTCGGGGCGAAAAGACAAATGA CAGTAGTTTCTGAATCCAAGAATCTTGAGATAGTGGAAGAAGAAGAAGAAGGAGAAGGAGGAGGAAGAGGGTCCACAATGCAGGTTCAGGCTGCACCTTG TTCATCCTCATCTGTGAGCTCTGTGACTACTGATTTAGGATTGGGGACATTATACTCTACGAAATTTCTCGATCACAAGGAGCAATGTGATCACCTATCC TCTACGAATTCCACCACCGAACCTGATGCAGCTAGCGATATCGTTTCTCGACAGATCGTCAAATCTTCTCCTCCCTCGAGGGTGCCATTGGACTTAGCCG ACTATAAAAGACTGAGGACATTGCTATCCAGAAAGGTTAGTTGGCAAGATTCAGCTATATCTGCTATATGTCAGTCTTTATCCAAGGCTAAATTCGGCTC CAAGTCCAGGAACGATATTTGGCTAACTTTTCTTGGACCTGATAAGATTGGGAAGAAGAAAATAGCTTCTGCATTGGCTGAAATTGTGTCCGGCAGCCAT GAAAATGTTATCTTTGTGGATCTTAGCTACCAACACGGGGCTGGATCATCGAATTCGGTGTATCAGTGTCGAGAATTGTACGAGGATGTAAATTTCAGAG GGAAAACGGTCATTGATTACATTGCTGCAGAGATGAAGAAGAAACCTCGCTCGGTCATCTTCCTTGAAAATATAGAGCAGGCTGATCTTCCAACTAAGGC TAGCTTATCCCAGGCGGTTTCGAAGGGTAAATTTGCAGACTCGCATGGGAGAGAAATCAGCACCAGCAACATGATTTTCATCACTACAACATCAGCCATG GTGGGGGATACAGATCTTTCGCATGAGAACAGAACTGTCAAGTACACCGAGGAATCGATACTTGGAGCTAAGAGGTGGCAGATGCAAATGCAGGTCGAAC CGGGTTCTCAAAGTTTAGGCATAACAGTAAGCAATGTGATCAAAGTTAAGGTTCAGGGAAAAACTTCCTCCGGTTCATTGATGAATAAGAGAAGAAAGCT ACAAGAAAGCAACGAATCGAAGAAACGAGGCTTTCTGGACTTAAACCTTCCGGTGGAGGAGACGGAAGAGGAGGATTTAGACGGTGCAGAGTGGATGCAA GACTTTTTCGAGCAAGTTGACGAGAAAATAGAGTTGAAGCCATTCGACTTTGACGCTCTGGGTGAGAAGATAGTGAAAGAAATCAGCTCTCAGGTAGAGA GAGTGTTTGGTGGGGTGGAGAAGGTAACGGTGGAGATCGAGAATGATGCCATGGTGCAAATGATTGCAGCTTCTTGGTCATCGGAAAAGGAGGAAGCCAC GGTGAAATGGGTTGAGAATGTTTTGGGGAGAGGATTTTCAGAGCTTCGGTATAAGTACAGCATCAGTAATGCTAATAACGTACCGTATGCAATCAAGTTA CAGAGTTGTTTTGGTATCTTGGCAGAAGAGCTAGCTCCTGGAATTTGCCTGCCCTCGAGAATCAACCTATGA
AA sequence Show only first row Show all	>Lus10036183 pacid=23169318 polypeptide=Lus10036183 locus=Lus10036183.g ID=Lus10036183.BGIv1.0 annot-version=v1.0 MAAIKRSQANQRRHPDSFHLQQIHFGNQAPAVIKVELKHFIGSILDDPVVSRVFGEAGFISCRIKSVILSPPLLLQTPRFPRAGLLPPSFFSRNLGSSDP GFGFGFSFSDDGAENSRRIGEVMVKQEGKGKNPLLLGACASDALKRFVERVKYNSTGNSIGGGGSSLPNEIAGISVVVIESDKEEAGQKFDELGRALEAC SGRGIVASFGDLEVLIGGDDDDTAGSYMVSKLTTLLERFKEKLWLIGAAASYDVYSKFLKRFPAVEKDWDLQLLPITSSSSSVSGLGSKSSLLGSFVPFG GFFPTTSDLPSPLSSMSEPLGRCHLCTAKYEQEVAALLKTAHQRSDNLPWLTMAEQIKGKGVDEASKIEDDGSIVALQKKWNDICQRLHRSQTFSKLDTS PSPKYQALVAEDSSTSIGGFNGIQNLFGAKRQMTVVSESKNLEIVEEEEEGEGGGRGSTMQVQAAPCSSSSVSSVTTDLGLGTLYSTKFLDHKEQCDHLS STNSTTEPDAASDIVSRQIVKSSPPSRVPLDLADYKRLRTLLSRKVSWQDSAISAICQSLSKAKFGSKSRNDIWLTFLGPDKIGKKKIASALAEIVSGSH ENVIFVDLSYQHGAGSSNSVYQCRELYEDVNFRGKTVIDYIAAEMKKKPRSVIFLENIEQADLPTKASLSQAVSKGKFADSHGREISTSNMIFITTTSAM VGDTDLSHENRTVKYTEESILGAKRWQMQMQVEPGSQSLGITVSNVIKVKVQGKTSSGSLMNKRRKLQESNESKKRGFLDLNLPVEETEEEDLDGAEWMQ DFFEQVDEKIELKPFDFDALGEKIVKEISSQVERVFGGVEKVTVEIENDAMVQMIAASWSSEKEEATVKWVENVLGRGFSELRYKYSISNANNVPYAIKL QSCFGILAEELAPGICLPSRINL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	0	1
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	2.8	0.8371
					Lus10007992 [exp]	5.7	0.8341
AT2G29970			Double Clp-N motif-containing ...		Lus10038320 [exp]	5.8	0.8397
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002808 [exp]	7.2	0.8214
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10010973 [exp]	8.7	0.8110
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Lus10026597 [exp]	10.9	0.8064
AT4G15545			unknown protein		Lus10012775 [exp]	11.8	0.7887
AT1G58848			Disease resistance protein (CC...		Lus10028076 [exp]	13.6	0.7997
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10019131 [exp]	16.2	0.7706
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	16.8	0.8088

Compare expression of checked genes

Lus10036183 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.