Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29980 550 / 0 AtFAD3, FAD3 fatty acid desaturase 3 (.1.2) AT5G05580 544 / 0 AtFAD8, SH1, FAD8 fatty acid desaturase 8 (.1.2) AT3G11170 542 / 0 AtFAD7, FADD, FAD7 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) AT3G12120 224 / 1e-69 FAD2 fatty acid desaturase 2 (.1.2) AT4G30950 107 / 2e-25 FADC, SFD4, FAD6 STEAROYL DESATURASE DEFICIENCY 4, FATTY ACID DESATURASE C, fatty acid desaturase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038321 [exp] 755 / 0 AT3G11170 543 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10040660 [exp] 654 / 0 AT3G11170 546 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10018245 [exp] 649 / 0 AT3G11170 549 / 0.0 FATTY ACID DESATURASE D, fatty acid desaturase 7 (.1) Lus10027809 [exp] 536 / 0 AT5G05580 664 / 0.0 fatty acid desaturase 8 (.1.2) Lus10005039 [exp] 483 / 2e-171 AT5G05580 557 / 0.0 fatty acid desaturase 8 (.1.2) Lus10004176 [exp] 234 / 2e-73 AT3G12120 519 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021050 [exp] 233 / 3e-73 AT3G12120 521 / 0.0 fatty acid desaturase 2 (.1.2) Lus10021045 [exp] 233 / 4e-73 AT3G12120 500 / 2e-178 fatty acid desaturase 2 (.1.2) Lus10004177 [exp] 224 / 1e-69 AT3G12120 508 / 0.0 fatty acid desaturase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G252900 [exp] 605 / 0 AT2G29980 539 / 0.0 fatty acid desaturase 3 (.1.2) Potri.010G187800 [exp] 569 / 0 AT5G05580 683 / 0.0 fatty acid desaturase 8 (.1.2) Potri.006G101500 [exp] 566 / 0 AT5G05580 632 / 0.0 fatty acid desaturase 8 (.1.2) Potri.008G069600 [exp] 562 / 0 AT5G05580 689 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G117500 [exp] 558 / 0 AT5G05580 592 / 0.0 fatty acid desaturase 8 (.1.2) Potri.016G046200 [exp] 239 / 2e-75 AT3G12120 624 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012401 [exp] 233 / 2e-72 AT3G12120 571 / 0.0 fatty acid desaturase 2 (.1.2) Potri.006G192000 [exp] 229 / 1e-71 AT3G12120 629 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012700 [exp] 224 / 6e-70 AT3G12120 553 / 0.0 fatty acid desaturase 2 (.1.2) Potri.001G012500 [exp] 161 / 2e-46 AT3G12120 480 / 3e-171 fatty acid desaturase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [flax] [poplar] FA_desaturase Fatty acid desaturase PF11960 [flax] [poplar] DUF3474 Domain of unknown function (DUF3474)
Representative CDS sequence Show only first row Show all	>Lus10036184 pacid=23169422 polypeptide=Lus10036184 locus=Lus10036184.g ID=Lus10036184.BGIv1.0 annot-version=v1.0 ATGAGCCCTCCAAACTCAATGAGTCCCACCACCAACGGCAATGGTGTGGCTATGAATGGGGCGAAGAAGCAGCTCGATTTCGACCCGAGTGCTGCCCCCC CTTTCAAGATTGCAGACATCCGTGCTGCAATTCCGCCGCATTGCTGGGTGAAGAACCCCTGGAGGTCGCTCAGCTACGTCCTGAGAGACCTCCTTGTCAT CCTCAGCTTCGCCGTTGCGGCGGCAAAGCTGGACAGCTGGACTTTCTGGCCTCTTTACTGGGTTGCTCAAGGAACCATGTTCTGGGCAGTCTTTGTTCTT GGACATGATTGTGGCCATGGGAGCTTCTCAGACATCTGGTTGTTGAACAATGTGATGGGACATATACTCCATTCCTCAATCCTCGTACCTTACCATGGAT GGAGAATTAGCCACAAGACCCATCACCAGAATCACGGCAATGTGGAGAAAGATGAATCCTGGGTTCCTCTACCGGAGAAAGTGTACAAGAGCTTGGATAC CAGCACTAAGTTCATGAGGTTCACCATTCCTCTCCCAATGTTTGCTTATCCTATCTACTTGTGGACGAGAAGTCCGGGGAAGAAAGGGTCGCATTTCAAC CCATACAGCGACCTATTCGCACCAAACGAGAGGGCAGCGGTCTTGATTTCAACATTGTGCTGGACAGCCATGGCCTTACTCCTCTGCTACTCATCGTTCA TATACGGCTTCGCTCCGGTCCTCAAAATCTACGGCGTACCTTATCTGATATTCGTGGCATGGCTCGACATGGTGACCTACCTTCATCACCACGGGTACGA GCAGAAGCTGCCGTGGTACAGAGGCAAAGAATGGAGCTACCTACGTGGAGGGCTGACGACCGTTGATCGAGATTACGGGGTCATCAACAACATCCACCAT GACATTGGCACCCATGTCATTCACCATCTCTTCCCTCAAATGCCACACTATCACCTTGTGGAAGCGACTCAGGCAGCGAAGCACGTGCTGGGGAAGTACT ACAGAGAGCCGAAGAAATCAGGGCCTTTCCCATTCCACTTGTTTGGGTACTTGGTAAGGAGCCTGGGCGAGGATCACTACGTTAGCGACACAGGCGACGT CGTTTTCTATCAGTCTGACCCACATATTCCCAAGTTCCGTACCAGCAGTGCCACCACCAAGTCCAAATCCAGCTGA
AA sequence Show only first row Show all	>Lus10036184 pacid=23169422 polypeptide=Lus10036184 locus=Lus10036184.g ID=Lus10036184.BGIv1.0 annot-version=v1.0 MSPPNSMSPTTNGNGVAMNGAKKQLDFDPSAAPPFKIADIRAAIPPHCWVKNPWRSLSYVLRDLLVILSFAVAAAKLDSWTFWPLYWVAQGTMFWAVFVL GHDCGHGSFSDIWLLNNVMGHILHSSILVPYHGWRISHKTHHQNHGNVEKDESWVPLPEKVYKSLDTSTKFMRFTIPLPMFAYPIYLWTRSPGKKGSHFN PYSDLFAPNERAAVLISTLCWTAMALLLCYSSFIYGFAPVLKIYGVPYLIFVAWLDMVTYLHHHGYEQKLPWYRGKEWSYLRGGLTTVDRDYGVINNIHH DIGTHVIHHLFPQMPHYHLVEATQAAKHVLGKYYREPKKSGPFPFHLFGYLVRSLGEDHYVSDTGDVVFYQSDPHIPKFRTSSATTKSKSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29980		AtFAD3, FAD3	fatty acid desaturase 3 (.1.2)		Lus10036184 [exp]	0	1
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10038321 [exp]	1.0	0.8438
AT4G31790			Tetrapyrrole (Corrin/Porphyrin...		Lus10034516 [exp]	1.4	0.8154
AT1G50920			Nucleolar GTP-binding protein ...		Lus10038748 [exp]	4.6	0.7590
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10039030 [exp]	22.8	0.6919
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	24.6	0.6260
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10026698 [exp]	27.7	0.7356
AT1G68470			Exostosin family protein (.1)		Lus10013701 [exp]	28.6	0.6963
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10028813 [exp]	32.5	0.6744
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10036855 [exp]	34.0	0.7323
AT3G14240			Subtilase family protein (.1)		Lus10034178 [exp]	41.9	0.7211

Compare expression of checked genes

Lus10036184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.