Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29990 739 / 0 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 738 / 0 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) AT4G28220 239 / 3e-72 NDB1 NAD(P)H dehydrogenase B1 (.1) AT4G21490 223 / 6e-66 NDB3 NAD(P)H dehydrogenase B3 (.1) AT4G05020 218 / 6e-64 NDB2 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) AT2G20800 204 / 7e-59 NDB4 NAD(P)H dehydrogenase B4 (.1) AT5G08740 107 / 1e-24 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G24170 43 / 0.0004 ATGR1 glutathione-disulfide reductase (.1.2.3) AT3G09940 42 / 0.001 MDAR2, ATMDAR3, MDHAR MONODEHYDROASCORBATE REDUCTASE 2, ARABIDOPSIS THALIANA MONODEHYDROASCORBATE REDUCTASE 3, monodehydroascorbate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038322 [exp] 963 / 0 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10040657 [exp] 819 / 0 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10020091 [exp] 691 / 0 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 680 / 0 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018248 [exp] 369 / 5e-126 AT1G07180 328 / 3e-110 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10018249 [exp] 306 / 2e-101 AT2G29990 274 / 3e-89 alternative NAD(P)H dehydrogenase 2 (.1) Lus10039769 [exp] 281 / 3e-88 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018541 [exp] 232 / 3e-69 AT4G28220 819 / 0.0 NAD(P)H dehydrogenase B1 (.1) Lus10018427 [exp] 213 / 1e-61 AT4G05020 797 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G047100 [exp] 760 / 0 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.004G036300 [exp] 698 / 0 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.011G044600 [exp] 694 / 0 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.013G147300 [exp] 225 / 7e-67 AT2G20800 801 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.013G147200 [exp] 217 / 8e-64 AT4G28220 852 / 0.0 NAD(P)H dehydrogenase B1 (.1) Potri.004G034100 [exp] 214 / 2e-62 AT4G05020 890 / 0.0 NAD(P)H dehydrogenase B2 (.1), NAD(P)H dehydrogenase B2 (.2) Potri.013G147400 [exp] 210 / 4e-61 AT2G20800 827 / 0.0 NAD(P)H dehydrogenase B4 (.1) Potri.011G042500 [exp] 204 / 5e-59 AT4G21490 869 / 0.0 NAD(P)H dehydrogenase B3 (.1) Potri.007G098700 [exp] 94 / 3e-20 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 49 / 6e-06 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00070 [flax] [poplar] Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10036185 pacid=23169352 polypeptide=Lus10036185 locus=Lus10036185.g ID=Lus10036185.BGIv1.0 annot-version=v1.0 ATGGCCTGGTTTCGGACCTTGACCCGATTATCAACAACCGTCAAATCCTTCCCGCCTCCGCCCATCAGAACCACACCCGTCGCCACCTCGCTCTCCTACT TCACCACCGTCGCCGCCGACAGCGCCCCTCCTCCTCATCCGACTCTGTCTCCGTCGCCGACTCACTGCGGAAGCTTGAAGCCCACGACAAGCGGCGAGAA GGCAAGGGTGGTGGTGTTGGGATCCGGATGGGCAGGCTGCCGATTGATGAAAGGAATCGACACCACCTTATACGACGTCGTCTGCGTTTCCCCCAGGAAT CACATGGTCTTCACCCCTCTCCTTGCTTCCACCTGCGTCGGAACTCTCGAATTCAGGTCTGTTGCTGAGCCGGTGGGTCGGATCCAACCCGCCATTTCTT CCGAACCCGGATCGTATTTCTTCCTCTCCAATTGCAAAGGGATCGACCCTCACAATCATTTGGTGAAGTGTGAGACGGTGACTGATGGACCAAACGCAGT GGAGCCATGGAAATTCACCATAGCGTATGATAAATTGGTGATCGCATTAGGAGCGGAGGCCACCACTTTTGGAATCCAGGGAGTCAAAGAGCATGCCATT TTTCTCAGAGAAGTTCATCAAGCTCAGGAGATTCGGAGGAAGCTGCTCCTGAATTTGATGCTCTCTGATGTCCCAGGCACTACAGAGCAGGAAAAGAGCA GATTGCTACATTGTGTTGTTGTAGGAGGTGGCCCAACTGGAGTTGAATTCAGCGGAGAGCTTAGTGATTTCATCATGAGAGATGTTCGTCAAAGGCATGC TCATGTCAAAGATTACATCCGCGTTACTTTGATTGAGGCAAATGAGATCTTGTCTTCCTTTGATGATCGTCTGCGGCAGTATGCTACAAAACAATTGACC AAGTCAGGAGTTCGACTTGTTCATGGCATTGTCAAGGATGTCGAGGCTGACAAGATAGTTCTTGATAATGGAACAGAGGTTCCTTATGGCTTACTGGTTT GGTCTACCGGTGTGGGCCCTTCGCCTCTTGTTAAATCTCTAGACTTGCCCAAAGCTCCTGGTGGAAGAATAGGGATTGATGAGTGGCTAAGGGTACCGAA TGTGCCGGATGTGTTTGCAATTGGTGACTGCAGTGGGTTTGTTGAGAGTACTGGTAAACCAGTCCTGCCCGCTTTAGCTCAGGTTGCAGAGAGGCAAGGT AAATATCTCGCAAGTCTACTAAATCGAATCGGTAAAGCTGGTGGAGGGCGGGCAAACAGCGGAGCAGAAGTAGATTTCGGAACTCCATTTGTCTACAAGC ATCTGGGAAGCATGGCGACCCTAGGGCGGTACAAGGCTCTTGTGGATCTTAGACAGAGCAAAGAAGGTAAAGGGATATCATTAGCTGGTTTCGTCAGCTG GTTCATATGGCGGTCAGCATACCTTACGCGAGTGATAAGCTGGAGGAACAGGTTTTACGTTGCTGTTAACTGGATGACAACGATGGTGTTTGGTCGTGAT ATAAGCAGAATCTAG
AA sequence Show only first row Show all	>Lus10036185 pacid=23169352 polypeptide=Lus10036185 locus=Lus10036185.g ID=Lus10036185.BGIv1.0 annot-version=v1.0 MAWFRTLTRLSTTVKSFPPPPIRTTPVATSLSYFTTVAADSAPPPHPTLSPSPTHCGSLKPTTSGEKARVVVLGSGWAGCRLMKGIDTTLYDVVCVSPRN HMVFTPLLASTCVGTLEFRSVAEPVGRIQPAISSEPGSYFFLSNCKGIDPHNHLVKCETVTDGPNAVEPWKFTIAYDKLVIALGAEATTFGIQGVKEHAI FLREVHQAQEIRRKLLLNLMLSDVPGTTEQEKSRLLHCVVVGGGPTGVEFSGELSDFIMRDVRQRHAHVKDYIRVTLIEANEILSSFDDRLRQYATKQLT KSGVRLVHGIVKDVEADKIVLDNGTEVPYGLLVWSTGVGPSPLVKSLDLPKAPGGRIGIDEWLRVPNVPDVFAIGDCSGFVESTGKPVLPALAQVAERQG KYLASLLNRIGKAGGGRANSGAEVDFGTPFVYKHLGSMATLGRYKALVDLRQSKEGKGISLAGFVSWFIWRSAYLTRVISWRNRFYVAVNWMTTMVFGRD ISRI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10016637 [exp]	3.0	0.8933
AT1G07040			unknown protein		Lus10030795 [exp]	4.0	0.8905
AT1G18835	ZF_HD	MIF3	mini zinc finger 3, mini zinc ...		Lus10002058 [exp]	6.0	0.8813
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	7.1	0.8956
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	7.5	0.9104
AT1G07040			unknown protein		Lus10013272 [exp]	8.9	0.8884
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10007765 [exp]	13.7	0.8804
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Lus10035728 [exp]	19.7	0.8494
AT5G09620			Octicosapeptide/Phox/Bem1p fam...		Lus10035641 [exp]	33.5	0.8565
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	34.4	0.8540

Compare expression of checked genes

Lus10036185 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.