Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53240 331 / 3e-115 mMDH1 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT3G15020 327 / 1e-113 mMDH2 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) AT2G22780 249 / 1e-82 PMDH1 peroxisomal NAD-malate dehydrogenase 1 (.1) AT5G09660 224 / 3e-73 PMDH2 peroxisomal NAD-malate dehydrogenase 2 (.1.2.3.4) AT3G47520 226 / 4e-73 pNAD-MDH, MDH plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) AT3G53910 62 / 2e-12 malate dehydrogenase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038323 [exp] 364 / 3e-128 AT3G15020 578 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Lus10013680 [exp] 350 / 4e-123 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10017939 [exp] 347 / 2e-121 AT1G53240 578 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Lus10039642 [exp] 243 / 4e-80 AT2G22780 617 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10011587 [exp] 242 / 3e-78 AT2G22780 547 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10034458 [exp] 230 / 1e-74 AT3G47520 572 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10019096 [exp] 228 / 9e-74 AT3G47520 575 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Lus10012459 [exp] 224 / 1e-72 AT2G22780 578 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Lus10021666 [exp] 223 / 6e-72 AT3G47520 542 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G096300 [exp] 332 / 1e-115 AT3G15020 541 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.001G376500 [exp] 332 / 2e-115 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2) Potri.004G054200 [exp] 327 / 2e-113 AT1G53240 520 / 0.0 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.009G081600 [exp] 247 / 6e-82 AT2G22780 602 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.001G287400 [exp] 244 / 6e-81 AT2G22780 588 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.007G009100 [exp] 242 / 4e-80 AT2G22780 612 / 0.0 peroxisomal NAD-malate dehydrogenase 1 (.1) Potri.017G102000 [exp] 233 / 6e-76 AT3G47520 591 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.004G112800 [exp] 231 / 5e-75 AT3G47520 583 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G101900 [exp] 230 / 1e-74 AT3G47520 580 / 0.0 plastidic NAD-dependent malate dehydrogenase, malate dehydrogenase (.1) Potri.017G152000 [exp] 129 / 5e-37 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036186 pacid=23169439 polypeptide=Lus10036186 locus=Lus10036186.g ID=Lus10036186.BGIv1.0 annot-version=v1.0 ATGATTAGCAATCCAGTGAACTCAACTGTTCCGATAGCGGCTGAGGTCTTCAAGAAAGCTGGAACTTATGATGAGAAAAGGTTATTTGGAGTTACTACTC TTGATGTGGTCAGGGCTAGGACTTTCTATGCTGGGAAGGCCAATGTCCCTGTCGCAGGGGTCAACATTCCAGTTGTAGGAGGGCATGCCGGTGTAACAAT TATCCCATTGTTTTCACAGAACTTTTCAGGTGAAGAGATAGTTGCTCTTACAAAGAGAACTCAAGACGGTGGCACGGAAGTCGTGGAAGCAAAGGCTGGA AAGGGCTCTACAACATCGTCAATGGCCTACGCCGGTGCCCTTTTCGCTGATGCGTGCTTGAAGGGGCTCAATGGTTTTCCAGATTTGGTCGAATGCACAT TTGTACAATCGAATGTAACCAAACTTCCTTTGTTTGCTTCAAAGGTGAGACTGGGAAAGAATGGCGTCGAGGAAGTCTTGGGATTGGGTCCTCTTTCTGA CTTTGAGAAACAAGGGTTGGAAAACATGAAGTCTGAGTTGAAATCCTCCATTGAGAAAGGAATTACCTTTGCCAACAAGTGA
AA sequence Show only first row Show all	>Lus10036186 pacid=23169439 polypeptide=Lus10036186 locus=Lus10036186.g ID=Lus10036186.BGIv1.0 annot-version=v1.0 MISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTLDVVRARTFYAGKANVPVAGVNIPVVGGHAGVTIIPLFSQNFSGEEIVALTKRTQDGGTEVVEAKAG KGSTTSSMAYAGALFADACLKGLNGFPDLVECTFVQSNVTKLPLFASKVRLGKNGVEEVLGLGPLSDFEKQGLENMKSELKSSIEKGITFANK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10036186 [exp]	0	1
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10011164 [exp]	4.2	0.6023
AT3G47870	AS2	ASL29, SCP, LBD...	SIDECAR POLLEN, ASYMMETRIC LEA...		Lus10033111 [exp]	4.7	0.7277
AT4G18180			Pectin lyase-like superfamily ...		Lus10016824 [exp]	11.2	0.6206
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10018785 [exp]	11.6	0.7031
					Lus10028940 [exp]	17.5	0.6664
AT1G03890			RmlC-like cupins superfamily p...		Lus10033893 [exp]	24.6	0.6292
AT4G00980			zinc knuckle (CCHC-type) famil...		Lus10020454 [exp]	31.5	0.5848
					Lus10033191 [exp]	32.3	0.6091
AT5G01150			Protein of unknown function (D...		Lus10002340 [exp]	35.7	0.5620
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10021821 [exp]	41.2	0.5604

Compare expression of checked genes

Lus10036186 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.