Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17820 624 / 0 Putative integral membrane protein conserved region (DUF2404) (.1) AT1G73200 612 / 0 Putative integral membrane protein conserved region (DUF2404) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038326 [exp] 1338 / 0 AT1G17820 705 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10040647 [exp] 984 / 0 AT1G17820 709 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Lus10018266 [exp] 925 / 0 AT1G17820 696 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155000 [exp] 761 / 0 AT1G17820 692 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1) Potri.018G152400 [exp] 743 / 0 AT1G17820 686 / 0.0 Putative integral membrane protein conserved region (DUF2404) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10296 [flax] [poplar] MMM1 Maintenance of mitochondrial morphology protein 1
Representative CDS sequence Show only first row Show all	>Lus10036188 pacid=23169457 polypeptide=Lus10036188 locus=Lus10036188.g ID=Lus10036188.BGIv1.0 annot-version=v1.0 ATGGCGTTGTTCCTGGTCTTCGTCGTGGGTTTCTTAGTCGGTGCGCTAGCTCTCGCTGCCATGGAAGCTCTGGGGGCGTACATCTTGCTGCACCGACTCA ACCGCAACGTACCCAAATCGCCGGAGCCAGGAGATTCGAAGAGAGACCTCGATCCCAGGCAGTCCCTCAAATTCGTTCACAACAAGAAGGGATCGATTTG GGTGCTTCAGCCTGATAAAGTTCCGAAAAGTTGGTTGCTAGAGAAGGACCAAAAGAAGAAGAAAGCTGTCTATGAGGTTGCCCCTGTTCGAAAAGATGCT AAAATTAGGGACCGGTTCCTTATTCTGGTAGATTCAGACGGTACACATACAGCTGTTCCTTTAGTTGGTTGCCTTGTAGAAGCTGTTTCTGCTACAAGTC TACCTTCAAAAAAATGGGCCAAAAGGTATCCCATTAAAATCGAAAGCAGGAGTTCCTTAATCTACAATGGAAGTAGAACAGTTTACATTTATCTTGAAAC ATCATGGGAGAAGGAGTCATGGTGTAAAGCGCTCCGTCTTGCCTCATGTGATGACAAACAGAGACTTTCCTGGTTTACCAAAGTAACTGAAGATTTCCAT TCTTATTTGATGTCCCTGACTACTGGGTACCGTTCGTTTTTGAAATCCTCTGCTGGTTTCAGTGAAGAAAGGGGGGATAGGGTGATCAAGTTTGATGGTA CAACATCAAAAGTTCGCTCATTTTTGAAAAAGCTTTCTAAAAGAGCTTCCAAGAATATTGCTGACAATAAGGAAACTCCTTTGAGCCATGAAAGCACTCG TCCATTTCAAGATTCTGTATTAGCCACCAACTTTGCAAAGACAGTATTATCAGTGAAGCCCTCTTCCATCCCTGAAGAAGATGATACGGAATCATCGGTC AATTCTGGTTCTCAAACCCATGCCTTTTCTGATGGAGAATATGATGATAGGTACAATGTAGATGATGGAACACTTTGCTGGAATTTGCTTATTTCTCGTC TTTTCTTTGATGTCAAAGGCAATCAGGAGACTAAGAGTTTGGTGCAAGCAAGGATTCAGAGGACACTGTCCGATATGAGAATTCCTTCTTACATTGGTGA AGTGATATGTACAAACCTACACCTTGGTAACGTGCCTCCTTACATACATGGCATTAGGGTTCTTTCTGTGGACATGAATGATGTTTGGATGTGGGATGTT GATATTGAATATTCTGGTGGGGTGGTTCTGGATATCGAGACAAGGCTAGAGGTTTGTGATCCAGATCTGCAGAAAGGTATCGTAGACACAACCATCGGAT CAAGCTCAGGGGGTGATATATCTTCAGACTTGCTGGAAGGTTTTGAATATTATGGGAAGCAGTTGAACATTCCTGAGGGGACAGCTGATACCCAAGAACT TAAGGAGGAAGGGGATTGTAAACTTGATGGGTCAAGAAGCATCTCAAGTAGCGTGCCATCATCAACACAAGTGTCCAAATGGAAGGCGATTGTTAATTCT GTTGCTAAACAAGTTTCACAGGTGCCGATTTCTTTGTCAATACGGGTTTCTTCTCTCCGCGGAACATTGCGGTTACAGATAAAGCCACCTCCTTCTGATC AGCTATGGGTTAGTTTCACATCCATGCCTGATATAGAGTTTGAACTGGAGTCTTCCGTTGGGGATCACAAGATTACCAGTGGGCGTATTGCTTTGTTCCT CGTCAATAAATTTAAGAGTGGTATTCGAGAGTCTTTGGTGCTTCCAAACTGTGAGAGTGTGGCAATTCCATGGATGTTGGCAGAAAAGAACGACTGGGTG GATCGGAAAGTTGCACCTTTCATGTGGCTTAATCGAGATGCAACCGGCGACCAAGCACTTGCAGGCGAAGTTGTTAGTTCCCAACCACCACCTAAACAAA AAACCAAGACAGAAGATAAAAAGAGACCCTCCAGCAATAGCCCAGACAGCAATCATGGAGCTAACAGGACTGGTGAAGATCAAAATGTTGTAAAATCTGA ATCTTCAGATACATTAGCTAGCCTGGAGAAATCATCGCCAGAAGCCAGGAAATCGTTAGAAGAACTAACAACACCGTTGTTAGTAACCCACGAACCACCA CAAGAAGCTCTTAAGCAGAATGTGGATCATGTTGCTGAAAGCTTGTCAACAACGTCCAGGTCTCTAATAAACGTGGATAGGCCGATAGAAGGTGTTGAAG AGCCAAAGAGATTGGGACGTAAAGCGAGGATGCTGGATCTCGGCAAAAAAATGAGTGAGAAGCTCGAAGAGAAAAGGCGCCACATGGAAGAAAAAGGTAG AAGCTTTGTGGAGAAGATGAGAGATAAAGCTGAAAATAAATAG
AA sequence Show only first row Show all	>Lus10036188 pacid=23169457 polypeptide=Lus10036188 locus=Lus10036188.g ID=Lus10036188.BGIv1.0 annot-version=v1.0 MALFLVFVVGFLVGALALAAMEALGAYILLHRLNRNVPKSPEPGDSKRDLDPRQSLKFVHNKKGSIWVLQPDKVPKSWLLEKDQKKKKAVYEVAPVRKDA KIRDRFLILVDSDGTHTAVPLVGCLVEAVSATSLPSKKWAKRYPIKIESRSSLIYNGSRTVYIYLETSWEKESWCKALRLASCDDKQRLSWFTKVTEDFH SYLMSLTTGYRSFLKSSAGFSEERGDRVIKFDGTTSKVRSFLKKLSKRASKNIADNKETPLSHESTRPFQDSVLATNFAKTVLSVKPSSIPEEDDTESSV NSGSQTHAFSDGEYDDRYNVDDGTLCWNLLISRLFFDVKGNQETKSLVQARIQRTLSDMRIPSYIGEVICTNLHLGNVPPYIHGIRVLSVDMNDVWMWDV DIEYSGGVVLDIETRLEVCDPDLQKGIVDTTIGSSSGGDISSDLLEGFEYYGKQLNIPEGTADTQELKEEGDCKLDGSRSISSSVPSSTQVSKWKAIVNS VAKQVSQVPISLSIRVSSLRGTLRLQIKPPPSDQLWVSFTSMPDIEFELESSVGDHKITSGRIALFLVNKFKSGIRESLVLPNCESVAIPWMLAEKNDWV DRKVAPFMWLNRDATGDQALAGEVVSSQPPPKQKTKTEDKKRPSSNSPDSNHGANRTGEDQNVVKSESSDTLASLEKSSPEARKSLEELTTPLLVTHEPP QEALKQNVDHVAESLSTTSRSLINVDRPIEGVEEPKRLGRKARMLDLGKKMSEKLEEKRRHMEEKGRSFVEKMRDKAENK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17820			Putative integral membrane pro...		Lus10036188 [exp]	0	1
AT5G57410			Afadin/alpha-actinin-binding p...		Lus10019997 [exp]	3.0	0.8904
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10013758 [exp]	8.6	0.8805
AT2G33400			unknown protein		Lus10011782 [exp]	9.7	0.8570
AT5G55230		ATMAP65-1	microtubule-associated protein...		Lus10043178 [exp]	13.9	0.8647
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10036045 [exp]	19.1	0.8431
AT1G23220			Dynein light chain type 1 fami...		Lus10034609 [exp]	21.1	0.7963
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	25.7	0.8482
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	26.3	0.8315
AT1G63640			P-loop nucleoside triphosphate...		Lus10032264 [exp]	28.6	0.8573
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Lus10023105 [exp]	30.0	0.8019

Compare expression of checked genes

Lus10036188 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.