Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73210 298 / 2e-99 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G17830 282 / 7e-93 Protein of unknown function (DUF789) (.1) AT4G03420 258 / 1e-83 Protein of unknown function (DUF789) (.1) AT1G03610 256 / 5e-83 Protein of unknown function (DUF789) (.1) AT4G28150 226 / 1e-71 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT2G01260 159 / 4e-45 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 156 / 6e-44 Protein of unknown function (DUF789) (.1) AT5G49220 156 / 1e-43 Protein of unknown function (DUF789) (.1) AT4G16100 154 / 1e-42 Protein of unknown function (DUF789) (.1) AT5G23380 123 / 4e-32 Protein of unknown function (DUF789) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038327 [exp] 566 / 0 AT1G73210 319 / 1e-108 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Lus10018572 [exp] 252 / 3e-81 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 224 / 3e-70 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 211 / 1e-65 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 191 / 2e-58 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10040646 [exp] 156 / 8e-46 AT1G03610 133 / 6e-38 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 158 / 5e-44 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 161 / 9e-44 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 157 / 1e-43 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G155200 [exp] 333 / 1e-112 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 318 / 4e-107 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 257 / 5e-83 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 256 / 7e-83 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.010G000700 [exp] 175 / 1e-50 AT5G49220 342 / 3e-115 Protein of unknown function (DUF789) (.1) Potri.008G213300 [exp] 166 / 2e-47 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.008G124000 [exp] 154 / 8e-43 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.010G120700 [exp] 151 / 1e-41 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.004G068700 [exp] 91 / 1e-19 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 78 / 4e-15 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10036189 pacid=23169328 polypeptide=Lus10036189 locus=Lus10036189.g ID=Lus10036189.BGIv1.0 annot-version=v1.0 ATGCCGGATTCGTATGGTAATCAGGAAGTGGGCCTTACTTGGATTTCTGTGGGCCCGAATTTGGCCCGTTTCCGAGATGCCGCGAATATCCAATTCGCTT TCGTCAGATTTCCGCCACCTGTCGTTCTCGACGTGGCGGAGTCCCGTCGTTTCTTCCCGGTGACCGGGTGGGACGCGTTTAACTTTTTACGATACTTAAA CGACGAGATGAGGTGTCGTTTTGAATCTTTTAAGTTAATTTTTCTTGTTTTTTCCGCCGGTCAGAGCTCCGTCGGCGATCTGAATAGCCAGTGGCGGCCG TTACGAAGCAAAGGAGCGGTGGAGTACTTCACCCTGTCGGATCTGTGGGATTGCTACGACGAGTTCAGTGCTTATGGTGCCGGAACGGAGGTAGAGCTAG ATGGAGAGAGTATCACTCAGTATTACGTTCCTTACCTCTCCGCGATCCACCTCTTCACGAACAAATCCATCCCAGCAGCTTCCAGGGCGGTGGCCGGTAG CGAGGCGTCGGAGTTCGAGATTACTGATTTGTGGGGTGAAGATAGCCCGAGCGGGAGTGATAAGCTGTCGAGGTCTTTAAGCGACACTTCTGCTAAGACT TGGGATACTGTTTCCGACGATTCCAGCTATGAGAATGATGGCTCTTCCCCTAAGAGCGAGAAGCTTGGGTCTGTTTACTTCAAGTACGTTGAGACGTGCT CTCCTTATTGGAGAGTCCCGCTTAAGGAGAAGGTGATGGAATTAGCTAAAAAGCATCCGGGACTGTTGACATTGAAAAACGTCGACCTCTCCCCTGCGAG TTGGATGGCTGTTTCGTGGTATCCCATTTATCATATTCCAACCCGAAGGGGTGAGAAGGATTTGGAGACAGGGTTTCTAACATTCCATACACTGTCCTCG TCTTTCCAAGATTATGAATCTGAGAACGTGAACAGCAAAGGTTCTCTCGACCTGGGAAAAACAGCAAGTGGAGGGTTTCGTAACGACAAGAGGGTTGATG GAATCCCCCTACCACCCTTTGGGCTGGCGACGTACAAGATGCAGGGGGATCTTTGGACAGGTGCAGCGGCGGACTATGAAAAAATGGTGCATCTTAAAAG TGCAGCGGATTCATGGCTGAAGCAGTTGGATGTGCACCACCATGACTTCAGCTTCTTCACAAACCATTCTGCCAGATGA
AA sequence Show only first row Show all	>Lus10036189 pacid=23169328 polypeptide=Lus10036189 locus=Lus10036189.g ID=Lus10036189.BGIv1.0 annot-version=v1.0 MPDSYGNQEVGLTWISVGPNLARFRDAANIQFAFVRFPPPVVLDVAESRRFFPVTGWDAFNFLRYLNDEMRCRFESFKLIFLVFSAGQSSVGDLNSQWRP LRSKGAVEYFTLSDLWDCYDEFSAYGAGTEVELDGESITQYYVPYLSAIHLFTNKSIPAASRAVAGSEASEFEITDLWGEDSPSGSDKLSRSLSDTSAKT WDTVSDDSSYENDGSSPKSEKLGSVYFKYVETCSPYWRVPLKEKVMELAKKHPGLLTLKNVDLSPASWMAVSWYPIYHIPTRRGEKDLETGFLTFHTLSS SFQDYESENVNSKGSLDLGKTASGGFRNDKRVDGIPLPPFGLATYKMQGDLWTGAAADYEKMVHLKSAADSWLKQLDVHHHDFSFFTNHSAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73210			Protein of unknown function (D...		Lus10036189 [exp]	0	1
AT1G18790		AtRKD1, RKD1	RWP-RK domain containing 1, RW...		Lus10035008 [exp]	7.4	0.7326
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	14.5	0.7998
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10040972 [exp]	21.1	0.7797
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10028830 [exp]	21.4	0.7846
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	22.8	0.7964
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	35.0	0.7667
AT5G62270			unknown protein		Lus10034311 [exp]	37.1	0.7410
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	40.4	0.7675
AT3G57450			unknown protein		Lus10031071 [exp]	41.1	0.7674
AT2G45720			ARM repeat superfamily protein...		Lus10016848 [exp]	50.3	0.7617

Compare expression of checked genes

Lus10036189 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.