Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45190 435 / 4e-148 Cyclin family protein (.1.2) AT4G19600 422 / 1e-143 CYCT1;4 Cyclin family protein (.1) AT4G19560 199 / 3e-58 CYCT1;2 Cyclin family protein (.1) AT1G35440 177 / 1e-52 CYCT1;1 cyclin T1;1 (.1) AT1G27630 145 / 1e-39 CYCT1;3 cyclin T 1;3 (.1) AT2G26430 98 / 3e-22 ATRCY1, RCY1 arginine-rich cyclin 1 (.1.2.3) AT5G48630 59 / 1e-09 Cyclin family protein (.1.2) AT5G48640 56 / 2e-08 Cyclin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038329 [exp] 861 / 0 AT5G45190 483 / 3e-167 Cyclin family protein (.1.2) Lus10040640 [exp] 530 / 0 AT5G45190 587 / 0.0 Cyclin family protein (.1.2) Lus10018272 [exp] 197 / 1e-59 AT5G45190 116 / 3e-29 Cyclin family protein (.1.2) Lus10021927 [exp] 146 / 6e-39 AT5G45190 246 / 2e-75 Cyclin family protein (.1.2) Lus10041213 [exp] 79 / 1e-15 AT5G45190 173 / 4e-49 Cyclin family protein (.1.2) Lus10036509 [exp] 79 / 2e-15 AT2G26430 411 / 2e-143 arginine-rich cyclin 1 (.1.2.3) Lus10041418 [exp] 67 / 1e-11 AT2G26430 475 / 2e-163 arginine-rich cyclin 1 (.1.2.3) Lus10003151 [exp] 62 / 1e-10 AT5G48630 402 / 2e-143 Cyclin family protein (.1.2) Lus10002354 [exp] 62 / 2e-10 AT5G48630 397 / 2e-141 Cyclin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G148800 [exp] 550 / 0 AT5G45190 635 / 0.0 Cyclin family protein (.1.2) Potri.001G081600 [exp] 539 / 0 AT5G45190 636 / 0.0 Cyclin family protein (.1.2) Potri.007G067100 [exp] 432 / 2e-146 AT5G45190 564 / 0.0 Cyclin family protein (.1.2) Potri.005G097400 [exp] 424 / 3e-143 AT5G45190 550 / 0.0 Cyclin family protein (.1.2) Potri.002G032300 [exp] 216 / 5e-65 AT5G45190 333 / 6e-109 Cyclin family protein (.1.2) Potri.008G150500 [exp] 138 / 2e-36 AT4G19600 229 / 4e-70 Cyclin family protein (.1) Potri.008G043600 [exp] 97 / 2e-21 AT2G26430 475 / 1e-166 arginine-rich cyclin 1 (.1.2.3) Potri.010G090400 [exp] 88 / 9e-19 AT4G19600 171 / 1e-48 Cyclin family protein (.1) Potri.002G246800 [exp] 63 / 7e-11 AT5G48630 382 / 6e-136 Cyclin family protein (.1.2) Potri.014G194900 [exp] 62 / 1e-10 AT5G48630 346 / 1e-121 Cyclin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF00134 [flax] [poplar] Cyclin_N Cyclin, N-terminal domain CL0065 [flax] [poplar] Cyclin PF02984 [flax] [poplar] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036192 pacid=23169406 polypeptide=Lus10036192 locus=Lus10036192.g ID=Lus10036192.BGIv1.0 annot-version=v1.0 ATGGAGACTGTAGCAACCGTGTGCATGTTCCTGGCTGGTAAGGTGGAGGAGACTCCCCGTCCTCTGAAAGATGTCATTCTCATCTCCTACGAGATAATAA ACAAAAAGGATCCACCAGCTGCCCATAGAATCAAACAGAAGGAAGTATATGAGCAACAGAAGGAGCTTATTTTAGTTGCGGAGAAGGTTGTGCTTAGCAC ATTGGGTTATGACTTTAACGTCCATCATCCATACAAACCTCTCGTCGAGGCAATTAAGAAATTCCAAGTTGCACAGAATGCACTTGCTCAAGTCGCGTGG AATTTTGTTAATGATGGACTGAGGACTTCGCTCTGCTTGCAATTTAAGCCACATCATATTGCAGCAGGTGCCATCTTCCTTGCTGCCAAGTTTCTCAAAG TGAAGCTTCCATCAGATGGGGAGAAGGTATGGTGGCAAGAATTTGATGTTACCCCACGCCAGTTAGAAGAGGTCAGCAATCAGATGCTCGAGTTATACGA GCAAAACAAATTGCCTCAGGCACAGGGAGGTGAAGCGGAAGCTGGAGGTGGCCAAGCTCATTCAGGAACGTCGAAACCTCCCGCTGTGAACCCGGAGCAT GCAACAAAGAAAACATCGTCTCGTCCATCGGTCGAACACACACATGCGGAAAACCACAGGGCTACCAAAACAACGCAGAATCAAAGTAATGATAATGGCA GCGCAGAGGGGGATAGTGTTATCGAAGATCACAATGCAAATATGGAAAATAAGGATGTTCAACCTGAAGATGCAAATGATTTATCCCCCGAGGAGAGCGC GAGAGAAGGTCCAAACAAATCATCTAGGTCCGGGGCAGATCGAATAAATGGAAAAGAACAAGAAAGGGAAGGTTTGGATACAGGAGAGGCAAGAGATGAA GATACGCCACGCAAGTCTACTAGCGGTCTAGTGGGGCGTAACTTGGATGTTAAGGATGCCCCGGTAAGCCAATCCCCTAAAGATGCTATAAAAATGATTG ACAGGGACAAAGTAAAGGCAGCACTGGAGAAAAGAAAGAAAGCTCGCGGGGAAATGACCAGAAAAAAAGATGTGATGGATGAGGATGATCTCATCGAGAG GGAGCTAGAAGACGGGATAGAGTTAGCAGCAGCAGAGGATGAGAAGATGAAGCGAGAAAGGCGGCAGAACTGGTCCAAGATGGAAAATACCGGTCGAGAC GGGGAGATCGAGGACGGGAACCATGAAGAAGGGGGGCCGTCAAGAGGGGGATTGGAGGTGGACAATGCCGAGGAAGGGGAGATGTTGGAAGATGGTTTGG TGGTGACGAACAGCCGGAAAAGGAAAGCTGGGAGCCCTGCCGAGAGGCTGTCAGAGGGTAAGAAGAGACATGATCATATGCCGCCGTTCATAAACAGCCA TGACGATCACAGGAGGCCCTCACAAGAGAATCATTCTTGA
AA sequence Show only first row Show all	>Lus10036192 pacid=23169406 polypeptide=Lus10036192 locus=Lus10036192.g ID=Lus10036192.BGIv1.0 annot-version=v1.0 METVATVCMFLAGKVEETPRPLKDVILISYEIINKKDPPAAHRIKQKEVYEQQKELILVAEKVVLSTLGYDFNVHHPYKPLVEAIKKFQVAQNALAQVAW NFVNDGLRTSLCLQFKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNKLPQAQGGEAEAGGGQAHSGTSKPPAVNPEH ATKKTSSRPSVEHTHAENHRATKTTQNQSNDNGSAEGDSVIEDHNANMENKDVQPEDANDLSPEESAREGPNKSSRSGADRINGKEQEREGLDTGEARDE DTPRKSTSGLVGRNLDVKDAPVSQSPKDAIKMIDRDKVKAALEKRKKARGEMTRKKDVMDEDDLIERELEDGIELAAAEDEKMKRERRQNWSKMENTGRD GEIEDGNHEEGGPSRGGLEVDNAEEGEMLEDGLVVTNSRKRKAGSPAERLSEGKKRHDHMPPFINSHDDHRRPSQENHS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45190			Cyclin family protein (.1.2)		Lus10036192 [exp]	0	1
AT5G45190			Cyclin family protein (.1.2)		Lus10038329 [exp]	1.0	0.9669
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10034688 [exp]	2.8	0.9093
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	2.8	0.9142
AT2G03170		ASK14	SKP1-like 14 (.1)		Lus10031171 [exp]	3.0	0.9126
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10033094 [exp]	5.1	0.8575
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028013 [exp]	5.1	0.8338
AT3G49601			unknown protein		Lus10000736 [exp]	6.0	0.8688
AT1G20920			P-loop containing nucleoside t...		Lus10035327 [exp]	6.0	0.8840
AT3G13780			SMAD/FHA domain-containing pro...		Lus10015611 [exp]	7.7	0.8613
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	9.4	0.8640

Compare expression of checked genes

Lus10036192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.