Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45160 1148 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1) AT3G13870 1051 / 0 GOM8, RHD3 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) AT1G72960 1031 / 0 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038333 [exp] 1532 / 0 AT5G45160 1217 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10040630 [exp] 1317 / 0 AT5G45160 1221 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10018282 [exp] 1169 / 0 AT5G45160 1055 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10037641 [exp] 999 / 0 AT1G72960 1108 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10015623 [exp] 543 / 2e-178 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10018281 [exp] 291 / 8e-93 AT5G45160 300 / 9e-97 Root hair defective 3 GTP-binding protein (RHD3) (.1) Lus10036197 [exp] 242 / 1e-75 AT5G45160 239 / 2e-75 Root hair defective 3 GTP-binding protein (RHD3) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G112700 [exp] 1193 / 0 AT5G45160 1161 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.003G038900 [exp] 1070 / 0 AT3G13870 1220 / 0.0 GOLGI MUTANT 8, Root hair defective 3 GTP-binding protein (RHD3) (.1), Root hair defective 3 GTP-binding protein (RHD3) (.2) Potri.001G201000 [exp] 1043 / 0 AT1G72960 1204 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116130 [exp] 758 / 0 AT5G45160 707 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116700 [exp] 748 / 0 AT5G45160 727 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.015G112600 [exp] 741 / 0 AT5G45160 717 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116210 [exp] 737 / 0 AT5G45160 719 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G116000 [exp] 712 / 0 AT5G45160 671 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117300 [exp] 666 / 0 AT5G45160 620 / 0.0 Root hair defective 3 GTP-binding protein (RHD3) (.1) Potri.012G117100 [exp] 487 / 3e-164 AT5G45160 507 / 3e-172 Root hair defective 3 GTP-binding protein (RHD3) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF05879 [flax] [poplar] RHD3 Root hair defective 3 GTP-binding protein (RHD3)
Representative CDS sequence Show only first row Show all	>Lus10036195 pacid=23169359 polypeptide=Lus10036195 locus=Lus10036195.g ID=Lus10036195.BGIv1.0 annot-version=v1.0 ATGGCTGATGACTGCTGCTCCACGCAACTGATTGACGGCGACGGCACATTCAATGTCGAAGGACTCGATCGCTTCGTCTCTATCACCAAGCTCTCCGACT GCGGTCTCTCCTACGCTGTTGTCGCTATCATGGGTCCTCAAAGCAGCGGCAAGAGTACATTGATGAATCATCTGTTCCATACCAATTTCAGGGAAATGGA TGCCTTCAGGGGAAGGGGTCAAACAACTAAAGGCATTTGGATGGCCAAGTGCGTTGGCATTGAGCCATTTACGCTTGGCATGGATCTAGAAGGAACTGAT GGCAGGGAAGGAGGAGAGGATGATACTACTTTCGAGAAACAAAGTGCACTTTTTGCTTTGGCTGTAGCTGATATTGTGATTATAAACATGTGGTGCCATG ACATTGGTCGGGAGCAGGCTGCAAATAAGCCCCTACTAAAAACAGTATTTCAGGTCATGATGCGTTTGTTCAGCCCTCGCAAAACTACGATGTTGTTTGT AATACGTGACAAAACAAAGACTCCCCTTGAATATCTTGAGCCTATTCTTAGAGAGGATGTTCAGAAGATTTGGGATTCAGTTCCTAAACCTCAGGCTCAC CTAGATACTCCTCTGAGTGAATTCTTTAATGTGGAGGTCACTGCACTATCCAGCTTTGAAGAGAAGGAGGTACAATTTAAGGAGCAGGTTGCTCAACTGA GACAGCGGTTTTTCCATTCCATTTCTCCAGGAGGGCTTGCTGGTGATAGAAGGGGTGTTGTGCCTGCTTCAGGATTTTCCTTTAGTGCGCAGCAGATATG GAAAATTATAAAGGAGAATAGGGATCTAGATCTCCCTGCTCACAAGGTGATGGTTGCAACCGTTCGTTGCCAAGAGATTGCTAATGAAAAGCTCTGTTGC TTGAAATCTGACGAGAGATGGTTGGAATTGGAGGAAGCTGTTGAAGCTGGTCCAGTATCAGGATTTGGGAAAATTGTCAGCTCTATACTGGAAAAATATA TTTCAGAGTACGACTTTGAAGCAACCTATTTTGAAGAAGGTGTGAGAAATTCAAAACGAGAAGAGCTAGCAACAAAAGTATTAGATCTGGTTCATCCTGT TTACCTCACACTATTAGGACATCTGCGTTCTAATGCACTAGAGGACTTCAAGATGAAGCTAGAGCAGTTACTGAGCAAAGGAGAGGGATTTGCTGCATCT GTTCGTACTTGTACCAAGTCTTGCCTTGCTGAGTTTGATAAAGGATGCAGAGATGCTTCCATAGAACAAGCTGATTGGGATGCTTCGAAAGTTAGGGAAA AGCTTCGCCGTGATATTGAGACACACGCTTCATCTGTGTGCAGTATTAAGCTCTCTGAAATGATGGCCACGTATGAGAAAAAGCTAGATAACGCGTTGAG TCATCCTATAGAATCCCTCTTTGAGTCTGGTGAAAAGGATACATGGGCTTCAATCAGAAAGCTTTTAATACGTGAGACCGATGCTGCTGTAGCAGAATAT TCAACTGCAGTTGCTGGTTTTGAATTGGATGAAGCCACAGTTAATACACAGGTACAAAACTTGAGGGAGTTTGCAAGAAATGTAGTGGAGAAGAAAGCAC GGGAAGATGCAGGGAAGGTTTTGATACGCATGAAAGATAGATTTTCCACTGTTTTCAACCATGATAATGATTCAATGCCAAGGGTTTGGACTGGAAAAGA GGACATTAAAGCTATCACGAAGGATGCACGATTAGCGTCCTTGAAACTTCTCTCGGTCATGGCTGCAGTACGCTTGAATGAAAAACCAGATAAGATTGAC AGCGTGCTTGCCTCCTCCCTCATGGATGGTACTATTACTACACAAAACAGAAGTATTGGAGCTACTACAGACCCTCTTGCTTCAAGTACATGGGAAGAGG TTTCGCCAAAAGATACGTTGATTACACCAGTTCAGTGCAAGTCGTTGTGGAGGCAGTTCAAAGCAGAGACAGAATATACTGTTACACAAGCAATTTCCGC TCAGGAGGCTCACAAACGAAGTAACAACTGGCTACCTCCTCCATGGGCAATTGTTGCAATGGCTGTCCTTGGATTCAATGAGTTCATGCTTCTCTTGAAG AACCCACTTTACCTAATGGTTATATTCGTCGGTTACTTGCTTTCCAAGGCTTTATGGGTACAGATGGACATTGCCGGCGAGTTTCGACATGGCCCTGTGG CCGGGATGCTATCTATCACATCCAAGTTTCTTCCCACAATAATGAATCTTCTAAAGCGACTTGCTGAAGAGGCTCAAGGTCAAGGTCACCAACAAGCAGC ACCTACAGTGCCAAGACCACCACAAGAACTCGATTCGCGCAGCTTTAAGCACGAATCTTCTAGTTCAACTCCGGTATCAACTGTAATCCCAGACTCTTCC GTATCCTCCAATGTTTCGTACTCTGAGAGTGGAAATGAGTACTCAAGCCCCAATATGACGTACAGGAGAAGTACCTACGGTGCGGAAGTAGAAGGAGAGC TACAGTACTGA
AA sequence Show only first row Show all	>Lus10036195 pacid=23169359 polypeptide=Lus10036195 locus=Lus10036195.g ID=Lus10036195.BGIv1.0 annot-version=v1.0 MADDCCSTQLIDGDGTFNVEGLDRFVSITKLSDCGLSYAVVAIMGPQSSGKSTLMNHLFHTNFREMDAFRGRGQTTKGIWMAKCVGIEPFTLGMDLEGTD GREGGEDDTTFEKQSALFALAVADIVIINMWCHDIGREQAANKPLLKTVFQVMMRLFSPRKTTMLFVIRDKTKTPLEYLEPILREDVQKIWDSVPKPQAH LDTPLSEFFNVEVTALSSFEEKEVQFKEQVAQLRQRFFHSISPGGLAGDRRGVVPASGFSFSAQQIWKIIKENRDLDLPAHKVMVATVRCQEIANEKLCC LKSDERWLELEEAVEAGPVSGFGKIVSSILEKYISEYDFEATYFEEGVRNSKREELATKVLDLVHPVYLTLLGHLRSNALEDFKMKLEQLLSKGEGFAAS VRTCTKSCLAEFDKGCRDASIEQADWDASKVREKLRRDIETHASSVCSIKLSEMMATYEKKLDNALSHPIESLFESGEKDTWASIRKLLIRETDAAVAEY STAVAGFELDEATVNTQVQNLREFARNVVEKKAREDAGKVLIRMKDRFSTVFNHDNDSMPRVWTGKEDIKAITKDARLASLKLLSVMAAVRLNEKPDKID SVLASSLMDGTITTQNRSIGATTDPLASSTWEEVSPKDTLITPVQCKSLWRQFKAETEYTVTQAISAQEAHKRSNNWLPPPWAIVAMAVLGFNEFMLLLK NPLYLMVIFVGYLLSKALWVQMDIAGEFRHGPVAGMLSITSKFLPTIMNLLKRLAEEAQGQGHQQAAPTVPRPPQELDSRSFKHESSSSTPVSTVIPDSS VSSNVSYSESGNEYSSPNMTYRRSTYGAEVEGELQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036195 [exp]	0	1
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10025070 [exp]	2.0	0.8474
AT4G32350			Regulator of Vps4 activity in ...		Lus10023635 [exp]	3.2	0.8459
AT5G35840		PHYC	phytochrome C (.1)		Lus10006389 [exp]	5.3	0.8247
AT1G73920			alpha/beta-Hydrolases superfam...		Lus10042973 [exp]	7.9	0.8351
AT5G45160			Root hair defective 3 GTP-bind...		Lus10038333 [exp]	8.0	0.8226
AT4G02030			Vps51/Vps67 family (components...		Lus10041387 [exp]	9.2	0.8337
AT5G19670			Exostosin family protein (.1)		Lus10012973 [exp]	12.7	0.8187
AT4G16440			ferredoxin hydrogenases (.1)		Lus10038798 [exp]	14.3	0.8287
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Lus10026688 [exp]	15.0	0.8031
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10034820 [exp]	15.5	0.8180

Compare expression of checked genes

Lus10036195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.