Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45110 460 / 2e-156 ATNPR3, NPR3 NPR1-like protein 3 (.1) AT4G19660 442 / 2e-149 ATNPR4, NPR4 NPR1-like protein 4 (.1) AT1G64280 290 / 1e-90 SAI1, NIM1, NPR1, ATNPR1 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) AT4G26120 254 / 1e-76 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT3G57130 117 / 4e-28 BOP1 BLADE ON PETIOLE 1, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1.2) AT2G41370 111 / 7e-26 BOP2 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) AT5G66055 45 / 8e-05 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038337 [exp] 814 / 0 AT5G45110 575 / 0.0 NPR1-like protein 3 (.1) Lus10018289 [exp] 659 / 0 AT5G45110 650 / 0.0 NPR1-like protein 3 (.1) Lus10040620 [exp] 650 / 0 AT5G45110 647 / 0.0 NPR1-like protein 3 (.1) Lus10018756 [exp] 296 / 3e-90 AT1G64280 506 / 2e-170 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Lus10024842 [exp] 206 / 1e-60 AT4G26120 316 / 7e-103 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10035413 [exp] 95 / 3e-20 AT2G41370 699 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10031017 [exp] 94 / 4e-20 AT2G41370 701 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Lus10024843 [exp] 52 / 7e-08 AT4G26120 94 / 2e-23 Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117200 [exp] 551 / 0 AT5G45110 656 / 0.0 NPR1-like protein 3 (.1) Potri.012G118500 [exp] 535 / 0 AT5G45110 644 / 0.0 NPR1-like protein 3 (.1) Potri.012G118300 [exp] 477 / 1e-164 AT5G45110 566 / 0.0 NPR1-like protein 3 (.1) Potri.002G056500 [exp] 462 / 2e-157 AT5G45110 518 / 1e-178 NPR1-like protein 3 (.1) Potri.005G206100 [exp] 457 / 4e-155 AT5G45110 531 / 0.0 NPR1-like protein 3 (.1) Potri.006G148100 [exp] 327 / 7e-105 AT1G64280 596 / 0.0 SALICYLIC ACID INSENSITIVE 1, NON-INDUCIBLE IMMUNITY 1, ARABIDOPSIS NONEXPRESSER OF PR GENES 1, regulatory protein (NPR1) (.1) Potri.015G116900 [exp] 158 / 1e-45 AT5G45110 169 / 3e-50 NPR1-like protein 3 (.1) Potri.006G043400 [exp] 115 / 2e-27 AT2G41370 671 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.016G040500 [exp] 112 / 2e-26 AT2G41370 639 / 0.0 BLADE ON PETIOLE2, Ankyrin repeat family protein / BTB/POZ domain-containing protein (.1) Potri.015G113466 [exp] 81 / 3e-18 AT5G45110 99 / 1e-25 NPR1-like protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF12313 [flax] [poplar] NPR1_like_C NPR1/NIM1 like defence protein C terminal CL0465 [flax] [poplar] Ank PF11900 [flax] [poplar] DUF3420 Domain of unknown function (DUF3420)
Representative CDS sequence Show only first row Show all	>Lus10036200 pacid=23169360 polypeptide=Lus10036200 locus=Lus10036200.g ID=Lus10036200.BGIv1.0 annot-version=v1.0 ATGGCTAATTTGTCTGAGCCATCGTCGTCTTTGAGCTTTACTTCATCATCCCATCTATCAAATGACTCCACAGTCTCTGATCAGGCAATACCAAGCCCTG ATGTGAGTAGCTTCACCAAACTTAGCTCCAACTTAGAGTCTCTCTTGACTGGTGGTTATTACAGTGATGCTGAAATTCTAGTTGATGAGGAACCTGTTGG CGTTCATCGCTGTATTTTGGCTGTAAGGAGTAAGTTTTTTCATGAATTGTTTAAAGGGGACAAGGGTTCAGATAAGGGAGGGAAACTTAGGTATAGTATG GATGCAATTTTGCCTTATGGCAAGATTGGACATGAAGCCTTTCTGGTTTTGTTAAGCTACTTGTATACTGGGAAACTTAAGCCGTTTCCAGTGGAGGTTT CGACTTGTGTGCATAGTGCTTGTGCTCATGATGCTTGTAGACCTGCGATTGATTTTGCTGTGGAGTTGATGTATGCTTCCTCCATCTTTCAGATCGTCGA GCTGGTCTCTCTTTTCCAGAACGTCATTGTGTATGCTCACATGAAGCCCTACATGTTTTGCAGAGACGCCTCCATGCTCTGCATAGAAAAGGAACTGCCT TATGAGGTGGCAGGGAATGTTAAGCTGTTCCGCCGCAAGCCTGTTTCTGACAACGACGAGGAAAAAAGAATCAAAAGAATACACAGGGCATTGGATTCGG ATGACGTGGAACTGGTGAAACTCCTCCTGACAGAATCAGATGTAACTTTAGACGATGCTTATGCTCTCCATTATGCAGCAGCTTACTGTGATCCAAAGGT TGTCCAGGAGGTGCTCAACCTTCAACAAGCTGATGTCAACCGTAGAGACTCACGCGGTTTTACAGTTCTTCACATTGCTGCAATGAGGAGGAAGCCGTCG GTTCTGGTTTCACTGTTGGAGAAAGGGGCTTGTGCTTCGGAGACTACACGAGATGGAGAAAATGCAGTTGGCATTTGTAGGAAGTTGACTAGGCCGAAAG ATTATCATTCGAAAACTGAGCAAGGAAAGGAGGCAAATAAAGATAAGATATGCATTGAGGTTTTGGAGAGGGAGATGGGGAACCCTATGGCATCAGAGGA CATCACTGCAACTCCTCGTACCCCAGATGAGGATCTGCACATGCAGCTATTGGACCTCGAGAACAGAGTGGCAATTGCCCGGTTCTTATTTCCGACGGAA GCCAAGCTAGCAATGGACATCGCAAAAGCTGATACAGCACCCAAGTTTGACCTAAACGAGACACTAATAATGCAGAAGAGAAGAATCCTGACCCGGTTGC AAGCACTTAAGAAAACAGGTAGTCACCATCATCATCTAAGCTTTACTTTTTATTTCACTTTGTTTATCGTGTTTCGACAATGTTCTGCTTACAATACTCT TAACACTGAGCATTATGGGTGGCTCTTGTCGACAACAGTGGAAACAGGGCGTCGCTACTTCCCCAATTGCTCCGAAGTCCTTGATAAGTTAATGGAAGAT GACCATGATGACGTGTTGTATCTCGAGAAGGGCACCGCTGACGAACAACGGATAAAGAGGAACCGTTATATGGAGCTTAAGGATGATGTTCAAAAGGCTT TCACCAAAGACAAGGCTGAGAACCGTATTGGATCGTCATCTTCATCTTCCTCAGCTCCATTAAAGAAAGGTTCCAACAAAAGGCTCAGAAAGGTATGA
AA sequence Show only first row Show all	>Lus10036200 pacid=23169360 polypeptide=Lus10036200 locus=Lus10036200.g ID=Lus10036200.BGIv1.0 annot-version=v1.0 MANLSEPSSSLSFTSSSHLSNDSTVSDQAIPSPDVSSFTKLSSNLESLLTGGYYSDAEILVDEEPVGVHRCILAVRSKFFHELFKGDKGSDKGGKLRYSM DAILPYGKIGHEAFLVLLSYLYTGKLKPFPVEVSTCVHSACAHDACRPAIDFAVELMYASSIFQIVELVSLFQNVIVYAHMKPYMFCRDASMLCIEKELP YEVAGNVKLFRRKPVSDNDEEKRIKRIHRALDSDDVELVKLLLTESDVTLDDAYALHYAAAYCDPKVVQEVLNLQQADVNRRDSRGFTVLHIAAMRRKPS VLVSLLEKGACASETTRDGENAVGICRKLTRPKDYHSKTEQGKEANKDKICIEVLEREMGNPMASEDITATPRTPDEDLHMQLLDLENRVAIARFLFPTE AKLAMDIAKADTAPKFDLNETLIMQKRRILTRLQALKKTGSHHHHLSFTFYFTLFIVFRQCSAYNTLNTEHYGWLLSTTVETGRRYFPNCSEVLDKLMED DHDDVLYLEKGTADEQRIKRNRYMELKDDVQKAFTKDKAENRIGSSSSSSSAPLKKGSNKRLRKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45110		ATNPR3, NPR3	NPR1-like protein 3 (.1)		Lus10036200 [exp]	0	1
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	1.4	0.9360
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	1.4	0.9352
AT1G60670			Protein of unknown function (D...		Lus10013072 [exp]	1.7	0.9062
AT1G78760			F-box/RNI-like superfamily pro...		Lus10024701 [exp]	2.2	0.8744
					Lus10008388 [exp]	2.6	0.8710
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	3.5	0.8888
AT1G26660			Prefoldin chaperone subunit fa...		Lus10026631 [exp]	4.2	0.8735
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10028867 [exp]	7.9	0.8650
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012319 [exp]	8.8	0.8604
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10021597 [exp]	8.9	0.8441

Compare expression of checked genes

Lus10036200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.