Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06880 59 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038340 [exp] 1521 / 0 AT3G06880 66 / 1e-10 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10039197 [exp] 197 / 8e-52 AT1G23030 79 / 2e-14 ARM repeat superfamily protein (.1) Lus10013745 [exp] 196 / 4e-51 AT1G23030 78 / 2e-14 ARM repeat superfamily protein (.1) Lus10013551 [exp] 152 / 5e-37 AT5G28540 506 / 6e-159 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017257 [exp] 134 / 1e-31 AT3G06880 186 / 3e-47 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10034937 [exp] 129 / 5e-30 AT3G06880 248 / 6e-67 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023666 [exp] 113 / 2e-25 AT3G06880 246 / 5e-68 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G117300 [exp] 784 / 0 AT3G06880 53 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G118600 [exp] 764 / 0 AT3G06880 54 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.001G012300 [exp] 207 / 8e-56 AT5G42340 72 / 7e-13 Plant U-Box 15 (.1) Potri.003G214100 [exp] 206 / 1e-54 AT5G42340 84 / 4e-16 Plant U-Box 15 (.1) Potri.005G240100 [exp] 143 / 2e-34 AT3G06880 237 / 3e-63 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G021600 [exp] 133 / 2e-31 AT3G06880 231 / 3e-61 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G083600 [exp] 111 / 1e-24 AT3G06880 219 / 1e-57 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.008G220800 [exp] 57 / 9e-08 AT3G06880 1115 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036201 pacid=23169399 polypeptide=Lus10036201 locus=Lus10036201.g ID=Lus10036201.BGIv1.0 annot-version=v1.0 ATGACTTCCTTACAGCAATTGCTAGCAGAGGAAGGATTCACCCGCGGAAAAAAGAAACATGGGAGCTTCAGAAACAGAGGCGATGAGTACTCTGCTCTTA ACCTCAAGCCTCCAGTGTACATTTCCCGGAAAGGCTCTTCGAGGAGGCAAAAAGATACAGCGAATATCACTCCACCGGAGATGGACCAAATCGCCGTGAG GGCGATCGTGTCCATACTCAGCGGATACGTCGGAAGGTACGCTAATGATGCGAACTTCCGACGGTCGATCCGCGAGAAATGCCATTCATGTCTGTTAAGG AAAGCAAACGATGGTGGTGATGATGACGGAATCCTGACAAACATGGAACTCACGTTCCAGAGCATCGACGGAGCATTGGTCGAGAACAGAGCGACCAATG GATCGTCGAAGAAGCTGAATTCCCTAAGGAATTCGATTCACCTCCTGACGATCGTCGCGTCGTTGAATTCAAAGAAATCAAGAACGGACGGATTCACCAC CACAGGTGGCATCCCCAACTCTTACCTATCTTCATGCGCGCAGCTGTACCTGTCCATTGTTTACAAGCTGGAGAAGAACGACAGGATTTCTGCAATTCAC TTGCTGCAGACTTTCTGTGACGCTCCATTGCTCGCGAGAACGCATTTGCTTCCCGATCTCTGGGAGCATTTCTTCCTCCCGCACCTCCTTCATTTGAAAG TCTGGTACCACGAGGAACTCGAAATCCTATCCGAGAAAGGATTGAAATCGCTCTGCAAAGTTTACAACGAGCAGATGGATATCGGGACGGTTCAGTTTGC TCTGTATTATAAAAACTGGCTCAAAATCGGCGTCAAGGCTCCTTCCATTCCGGATGTTCCTCTTCCATGGAAACAGAGCTTATCATCAAGACGGAGAACT CGATCGTCCATGGATTCTTGTGATTCTCACCTCTCCATCAATAGAAGCTTATTTGATTATGTTTTTAGCCGAACACCTCACCGTCAATCATCGATGGAAA TCAACCGTCAGGATTGCAATCCTCTGGCAGTTAGTAAGAGCGAATCGAACTGTTCAAAGAGAAGCGGAAGGGGATCAGAGATTGAAGCGCCTAGCAATGC ACAGAGAGTAAAAGAAGAATACGTGAAATTCTTTTCCTGCAAGAGCATGGTAGCAGAATGTTTGGCAGATGGAAAATCGGCGGTGCGGAAGAAAAACGAT TCTTTCCGAAATTCAGCAGATGGTTATTCTTCGAAGCCTCGTTGTTCGAAAAACAATGGATTGAGGATATCAATCATCAAAATATGCACTTCAGAAGTCC TCCCAGAGTGCGAATCGGCAATCCACAATATTGCCACAGAGTGGCTGAATTCTCGCGGAAGCGAGAATCTTCCGCTCGTGGAGGACGCATTGTCTCGACA ACCAGTGATCGAGTCGATGCTCGAAATCCTTTACGCCTCGGGAGACGAAGAGGTTCTCGAGCTAATCGTCTCCCTTCTGGCGGAGCTAGTCGCTAGAAGG AAGACGAACAGAATGACAGTTCTCAACTACGATCCGCAGCTGGAAATTTTCATCAAGCTGATGAAAAGCAGCAGCCTTTTCCTGAAAGGAGCGGCTCTTC TCTACCAGCTGAGGCCGATGGCGAAACAGATGATATCGGCCGAATGGGTGGCCTTAGTGCTCCGCGTGCTGGAATTCGGCGATCAAACACAGGTTCTTTT CGACGTTGTATGTGTGCCTCATGAAGCGGCATTGTACTTCTTGGAGCAGCTTATGACCGGGTTCGATGAAGATAAGAACTTGGAGAATTCTTGCCAGGTG GTTTCGCTCGGTGGGTTGAGTTTGTTGGTTCGGAGATTTGAGATTGGAGATTTCGAGGAGAGGAACCGAGTTGCGAGGTTGATGTGCAGTTGTGTGAAAG CTGTTGAGAGTTGTAGGGATTACTTGGCTGACAATTTGAGCAAAGGGTTGCTTCTTCAGCTTATTAGTGATGAGATGAGAAAACAACATAGCATGAAAGT CTTTGGGTTCAAGTTGTTGACAGAGTTGCTCTGCCTCAGTAGAAGGACGCGGATCATAAGGGTGTTGAGTGGAATCAATGATGGATTTGAAGGGTTGAAT GCAATGCACATATTTCTGGCGTATCTACAGAGGGCTTCACCCGAGGATCGCCCCTTGGTTGCAACGCTTCTTCTGCAGCTTGATCTTCTGGGAGATGCTA TGAAGCATAGTATTTACAGAGAAGAAGCAGTCGAAGTGTTGATAGAGTGTTTGGATTGCGAGAGATGCGATTCGAAGGCTCAACAACAAACCGCAAGAGC TCTTCTAATGATGGGGGGATGCTTCTCTTACGAAGGCGAGACGAAAACAACAGCAACATCAACGGAGGAATGGCTATTTCAAGGAAGATCAGACGTTTCC ATCCGCCACAATCGAATACTCAACAGTGACTTGAACGAGGAAGAGGAAGCTACATCAGAATGGCAAAGCAAACTAGCAACGGTGTTGCTAAACAGCGGCG GGAGGAGATTCTTAACGGCTCTTTCTGCCGCAATAGCAAATGGGATCCCTAACTTAGTACACGCCAGCTTGTTTACAGTGTCGTGGATGAACAACATGTT CCTAACATCCAGCGACCGAAACTTGGTCCCCGCTGCACACTCCATACTCATGTCTCAACTCCTTCATGATCAAGCTGTTCTGGTTCTGGTTCTGGGGTGG CAAAATACTATTGTCATGGATATGTTGCTTAGTGTAGTCGCTATCTGGGAAAGCACATGGGCAGCAGCACCAGCATTCTGA
AA sequence Show only first row Show all	>Lus10036201 pacid=23169399 polypeptide=Lus10036201 locus=Lus10036201.g ID=Lus10036201.BGIv1.0 annot-version=v1.0 MTSLQQLLAEEGFTRGKKKHGSFRNRGDEYSALNLKPPVYISRKGSSRRQKDTANITPPEMDQIAVRAIVSILSGYVGRYANDANFRRSIREKCHSCLLR KANDGGDDDGILTNMELTFQSIDGALVENRATNGSSKKLNSLRNSIHLLTIVASLNSKKSRTDGFTTTGGIPNSYLSSCAQLYLSIVYKLEKNDRISAIH LLQTFCDAPLLARTHLLPDLWEHFFLPHLLHLKVWYHEELEILSEKGLKSLCKVYNEQMDIGTVQFALYYKNWLKIGVKAPSIPDVPLPWKQSLSSRRRT RSSMDSCDSHLSINRSLFDYVFSRTPHRQSSMEINRQDCNPLAVSKSESNCSKRSGRGSEIEAPSNAQRVKEEYVKFFSCKSMVAECLADGKSAVRKKND SFRNSADGYSSKPRCSKNNGLRISIIKICTSEVLPECESAIHNIATEWLNSRGSENLPLVEDALSRQPVIESMLEILYASGDEEVLELIVSLLAELVARR KTNRMTVLNYDPQLEIFIKLMKSSSLFLKGAALLYQLRPMAKQMISAEWVALVLRVLEFGDQTQVLFDVVCVPHEAALYFLEQLMTGFDEDKNLENSCQV VSLGGLSLLVRRFEIGDFEERNRVARLMCSCVKAVESCRDYLADNLSKGLLLQLISDEMRKQHSMKVFGFKLLTELLCLSRRTRIIRVLSGINDGFEGLN AMHIFLAYLQRASPEDRPLVATLLLQLDLLGDAMKHSIYREEAVEVLIECLDCERCDSKAQQQTARALLMMGGCFSYEGETKTTATSTEEWLFQGRSDVS IRHNRILNSDLNEEEEATSEWQSKLATVLLNSGGRRFLTALSAAIANGIPNLVHASLFTVSWMNNMFLTSSDRNLVPAAHSILMSQLLHDQAVLVLVLGW QNTIVMDMLLSVVAIWESTWAAAPAF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06880			Transducin/WD40 repeat-like su...		Lus10036201 [exp]	0	1
AT2G23140			RING/U-box superfamily protein...		Lus10019308 [exp]	7.1	0.8374
AT1G76990		ACR3	ACT domain repeat 3 (.1.2.3.4....		Lus10028646 [exp]	7.2	0.8299
AT4G35890			winged-helix DNA-binding trans...		Lus10014255 [exp]	10.5	0.7967
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10032018 [exp]	10.5	0.8466
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Lus10037093 [exp]	11.3	0.8479
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	12.4	0.7868
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	12.6	0.8322
AT1G35420			alpha/beta-Hydrolases superfam...		Lus10016930 [exp]	20.9	0.8442
AT2G40840		DPE2	disproportionating enzyme 2 (....		Lus10031010 [exp]	21.8	0.7987
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10013029 [exp]	25.1	0.8347

Compare expression of checked genes

Lus10036201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.