Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33120 352 / 1e-124 ATVAMP722, SAR1 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) AT1G04750 348 / 4e-123 ATVAMP7B, ATVAMP721, VAMP7B VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) AT2G32670 350 / 7e-123 ATVAMP725 vesicle-associated membrane protein 725 (.1) AT1G04760 347 / 1e-122 ATVAMP726 vesicle-associated membrane protein 726 (.1) AT4G15780 290 / 2e-100 ATVAMP724 vesicle-associated membrane protein 724 (.1) AT3G54300 278 / 3e-95 ATVAMP727 vesicle-associated membrane protein 727 (.1.2) AT2G33110 271 / 4e-93 ATVAMP723 vesicle-associated membrane protein 723 (.1) AT5G11150 155 / 3e-47 ATVAMP713 vesicle-associated membrane protein 713 (.1) AT4G32150 153 / 2e-46 ATVAMP711, VAMP7C vesicle-associated membrane protein 711 (.1) AT5G22360 146 / 1e-43 ATVAMP714 vesicle-associated membrane protein 714 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038342 [exp] 419 / 5e-151 AT1G04760 366 / 3e-130 vesicle-associated membrane protein 726 (.1) Lus10040611 [exp] 409 / 3e-147 AT1G04760 369 / 1e-131 vesicle-associated membrane protein 726 (.1) Lus10018296 [exp] 405 / 1e-145 AT1G04760 366 / 2e-130 vesicle-associated membrane protein 726 (.1) Lus10038166 [exp] 350 / 8e-124 AT1G04760 383 / 3e-137 vesicle-associated membrane protein 726 (.1) Lus10022804 [exp] 348 / 3e-123 AT1G04760 377 / 1e-134 vesicle-associated membrane protein 726 (.1) Lus10011870 [exp] 347 / 7e-123 AT1G04760 376 / 3e-134 vesicle-associated membrane protein 726 (.1) Lus10025933 [exp] 347 / 8e-123 AT1G04760 381 / 2e-136 vesicle-associated membrane protein 726 (.1) Lus10000754 [exp] 336 / 3e-118 AT1G04760 372 / 8e-133 vesicle-associated membrane protein 726 (.1) Lus10011737 [exp] 289 / 4e-100 AT1G04760 324 / 4e-114 vesicle-associated membrane protein 726 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119600 [exp] 383 / 5e-137 AT2G33120 363 / 2e-129 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.015G118300 [exp] 381 / 3e-136 AT2G33120 359 / 8e-128 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.003G177700 [exp] 353 / 3e-125 AT1G04750 389 / 1e-139 VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B, vesicle-associated membrane protein 721 (.1.2) Potri.001G050400 [exp] 339 / 7e-120 AT2G33120 365 / 4e-130 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.002G240900 [exp] 335 / 3e-118 AT2G33120 355 / 3e-126 ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 722, synaptobrevin-related protein 1 (.1.2.3) Potri.008G209100 [exp] 287 / 3e-99 AT4G15780 367 / 9e-131 vesicle-associated membrane protein 724 (.1) Potri.008G019400 [exp] 276 / 1e-94 AT3G54300 407 / 3e-146 vesicle-associated membrane protein 727 (.1.2) Potri.010G239900 [exp] 274 / 1e-93 AT3G54300 387 / 6e-138 vesicle-associated membrane protein 727 (.1.2) Potri.009G018900 [exp] 151 / 1e-45 AT5G22360 367 / 6e-131 vesicle-associated membrane protein 714 (.1) Potri.018G025800 [exp] 149 / 1e-44 AT4G32150 366 / 2e-130 vesicle-associated membrane protein 711 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00957 [flax] [poplar] Synaptobrevin Synaptobrevin
Representative CDS sequence Show only first row Show all	>Lus10036203 pacid=23169393 polypeptide=Lus10036203 locus=Lus10036203.g ID=Lus10036203.BGIv1.0 annot-version=v1.0 ATGGGACAGAAACCGCTGATCTACGCTTTTGTCTCCCGAGGAACTGTGGTTCTCTCCGAGTACACTGAATTCAGCGGAAATTTCAACTCCATCGCCTTTC AGTGCCTCCAGAAGCTGCCGGCCTCTAACAACAAGTTCACTTACAACTGCGACGGCCACACTTTCAATTATCTCGTTGATAATGGCTACACGTATTGCGT GGTTGCTGATGAATCAGCGGGAAGACAGGTGCCGATGGCTTTCCTGGAGCGCATCAAGGAGGATTTCATGACGAAGTATGGTAGTGGAAAGGCTACAACA GCTACTGCCAACAGCCTAAACAAGGAATTTGGGCCAAAATTGAAAGAGCACATGCAGTACTGTGTGGATCATCCTGAAGAGATAAGCAAGTTGGCCAAGG TTAAAGCTCAAGTTACTGAAGTCAAAGGTGTTATGATGGAGAACATTGAGAAGGTTTTGGATAGGGGTGAAAAGATAGAACTTCTGGTGGATAAAACCGA GAACCTTCATCAACAGGCACAAGATTTCCGATCGACGGGAACGCAGATAAGGAGGAAGATGTGGCTACAGAATATGAAGATCAAGCTCATTGTTCTGGGG ATACTCGTTGCTTTGATCCTCATCATTGTACTCTCAATCTGCAAAGGTTTCAACTGTGGTAAAAAGTAA
AA sequence Show only first row Show all	>Lus10036203 pacid=23169393 polypeptide=Lus10036203 locus=Lus10036203.g ID=Lus10036203.BGIv1.0 annot-version=v1.0 MGQKPLIYAFVSRGTVVLSEYTEFSGNFNSIAFQCLQKLPASNNKFTYNCDGHTFNYLVDNGYTYCVVADESAGRQVPMAFLERIKEDFMTKYGSGKATT ATANSLNKEFGPKLKEHMQYCVDHPEEISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLHQQAQDFRSTGTQIRRKMWLQNMKIKLIVLG ILVALILIIVLSICKGFNCGKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10036203 [exp]	0	1
AT5G26990			Drought-responsive family prot...		Lus10015214 [exp]	1.0	0.8933
AT2G37975			Yos1-like protein (.1)		Lus10000226 [exp]	2.0	0.8790
					Lus10007301 [exp]	5.5	0.8571
AT3G18430			Calcium-binding EF-hand family...		Lus10022173 [exp]	5.8	0.8357
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	7.1	0.8771
AT5G03990			unknown protein		Lus10016362 [exp]	7.4	0.8677
AT5G51880			2-oxoglutarate (2OG) and Fe(II...		Lus10038893 [exp]	8.0	0.8518
AT2G46080			unknown protein		Lus10036385 [exp]	9.6	0.8711
AT3G12360		ITN1	INCREASED TOLERANCE TO NACL, A...		Lus10030312 [exp]	10.5	0.8510
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	10.6	0.8404

Compare expression of checked genes

Lus10036203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.