Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27530 179 / 2e-54 Pectin lyase-like superfamily protein (.1) AT5G44830 175 / 4e-54 Pectin lyase-like superfamily protein (.1) AT4G35670 173 / 6e-53 Pectin lyase-like superfamily protein (.1) AT5G44840 169 / 2e-51 Pectin lyase-like superfamily protein (.1) AT4G32380 162 / 4e-49 Pectin lyase-like superfamily protein (.1) AT5G17200 162 / 2e-48 Pectin lyase-like superfamily protein (.1) AT4G32375 159 / 6e-47 Pectin lyase-like superfamily protein (.1) AT3G15720 152 / 3e-44 Pectin lyase-like superfamily protein (.1.2) AT4G32370 140 / 9e-41 Pectin lyase-like superfamily protein (.1) AT1G80140 137 / 9e-40 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018302 [exp] 202 / 7e-66 AT5G17200 242 / 3e-78 Pectin lyase-like superfamily protein (.1) Lus10040604 [exp] 202 / 1e-64 AT3G15720 249 / 1e-79 Pectin lyase-like superfamily protein (.1.2) Lus10002727 [exp] 199 / 5e-63 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10040610 [exp] 195 / 1e-60 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10016940 [exp] 193 / 4e-60 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10014826 [exp] 190 / 2e-58 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10032875 [exp] 162 / 3e-48 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10019711 [exp] 148 / 1e-42 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 146 / 1e-41 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G119700 [exp] 204 / 6e-65 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.018G028700 [exp] 184 / 1e-56 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 160 / 7e-48 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.006G252900 [exp] 156 / 3e-46 AT5G44840 297 / 3e-98 Pectin lyase-like superfamily protein (.1) Potri.001G463000 [exp] 144 / 4e-41 AT1G23460 634 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 143 / 9e-41 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.009G060400 [exp] 142 / 1e-40 AT3G07970 514 / 0.0 QUARTET 2, Pectin lyase-like superfamily protein (.1) Potri.017G006700 [exp] 140 / 2e-40 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.016G054800 [exp] 141 / 3e-40 AT2G41850 421 / 7e-145 ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 2, polygalacturonase abscission zone A. thaliana (.1) Potri.011G159000 [exp] 140 / 1e-39 AT1G23460 667 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00295 [flax] [poplar] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Lus10036205 pacid=23169414 polypeptide=Lus10036205 locus=Lus10036205.g ID=Lus10036205.BGIv1.0 annot-version=v1.0 ATGCAAGTCTCCAACACTTCATTTTCAGTGGCGCCTGACGAAAGCCCCAACACTGACGGGATCGAAATCTCCCATTCCTCCCATGTTCGAATCTACGACT CCTTCATTGGAACAGGCGACGACTGCATTGCCGTCAATGGCTTCTCGTCTGACGTCAACATTACCCACATCAGCTGTGGCCCTGGTCATGGCATTAGTAT CGGAAGCTTGGGGAAGAATGGAGCCTACGAGACCGTGGAAGATATCCGTGTTACGGACTCCACGTTCACTCGAACTCAGAACTGTGCTAGAATCAAGACC TGGAAGGGAGGAAAAGGGTATGTGAGGAAGGTCACCTTTGAGAGGATCACACTCGTTGAGGCACGAAACCCAATCATCATCGACCAGAACTATATGAGTC GTCATTATGTTCCTGCAGAACCCTCATCAGATGTTGACATCAGTGACGTTCTGTACCGTGAGGTGCATGGATCTACTACTGACAAGAAAGCTGTCCCTTC TTCTGTGGGCAACGGTGCAGCAACATTGTTGTGGAGAACGTTAACATAA
AA sequence Show only first row Show all	>Lus10036205 pacid=23169414 polypeptide=Lus10036205 locus=Lus10036205.g ID=Lus10036205.BGIv1.0 annot-version=v1.0 MQVSNTSFSVAPDESPNTDGIEISHSSHVRIYDSFIGTGDDCIAVNGFSSDVNITHISCGPGHGISIGSLGKNGAYETVEDIRVTDSTFTRTQNCARIKT WKGGKGYVRKVTFERITLVEARNPIIIDQNYMSRHYVPAEPSSDVDISDVLYREVHGSTTDKKAVPSSVGNGAATLLWRTLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27530			Pectin lyase-like superfamily ...		Lus10036205 [exp]	0	1
AT2G33050		AtRLP26	receptor like protein 26 (.1)		Lus10019693 [exp]	1.7	0.8724
AT1G11270			F-box and associated interacti...		Lus10025893 [exp]	3.2	0.8698
AT3G15200			Tetratricopeptide repeat (TPR)...		Lus10031269 [exp]	4.9	0.8493
AT1G66930			Protein kinase superfamily pro...		Lus10008362 [exp]	4.9	0.8640
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10034090 [exp]	6.7	0.8579
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008756 [exp]	7.8	0.8024
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Lus10007210 [exp]	8.8	0.8437
AT4G27280			Calcium-binding EF-hand family...		Lus10039724 [exp]	9.2	0.8418
AT2G45910			U-box domain-containing protei...		Lus10036363 [exp]	9.5	0.8462
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	11.7	0.8603

Compare expression of checked genes

Lus10036205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.