Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35155 792 / 0 Trypsin family protein (.1) AT5G45030 781 / 0 Trypsin family protein (.1.2) AT3G12950 660 / 0 Trypsin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038347 [exp] 1093 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2) Lus10018312 [exp] 918 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2) Lus10017140 [exp] 881 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2) Lus10031205 [exp] 729 / 0 AT5G45030 734 / 0.0 Trypsin family protein (.1.2) Lus10031785 [exp] 719 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G121700 [exp] 956 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2) Potri.015G121400 [exp] 939 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2) Potri.011G143200 [exp] 800 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036208 pacid=23169436 polypeptide=Lus10036208 locus=Lus10036208.g ID=Lus10036208.BGIv1.0 annot-version=v1.0 ATGGACAGGAACAGGTTGGATTTAAGATTGCATCACTCTGGATCGACGCAGTCGGAAGAATCTGCTTTGGACATGGAAAGAAACTACTGCCCTCATTCTA ATCTTCCTTGGTCAAGTCCATCATCATTGCAGCCTCTCGCATCAGGCGGCCAGCACTCGGAGAGTAATGCTGCCTACTTCTCGTGGCCTACTTTGAGTAG ATTGACTGACACAGCCGAAGATAGAGCAAACTATTTCGGTAACCTTCAGAAGGGTGTCTTACCCGAAATACTTGGCAGGTTGCCAACAGGGCAGCAAGCA ACCACTTTACTCGAACTGATGACCATCAGGGCCTTCCACAGCAAAATCTTGCGTAGGTTTAGCCATGGCACGGCTATTGGATTTAGAATTCGACGCGGTG TTCTGACTGATATTCCTGCCATTCTTGTATTTGTTGCCCGTAAAGTGCATCGACAATGGCTCAGCCATGTCCAGTGCTTACCTTCTGCCCTTGAGGGACC TGGTGGGGTGTGGTGTGATGTGGATGGAGTGGAATTCTCATATTTTGGTGCTCCAGCCCCTACACCAAAGGAACAGCTGTATAGTGAACTTGTTGACGGT TTAAGGGGAGGTGATCCATCAATTGGTTCCGGGTCTCAGGTGGCTAATCAAGAAACTTATGGAACCTTGGGAGCTATAGTGAAAAGCCGAACCGGAAACC GACAGGTCGGTTTTCTCACAAATCGACATGTTGCAGTTGATCTGGATTATCCAAACCAGAAAATGTTTCATCCTTTGCCTCCCAGCCTTGGACCTGGTGT ATATTTGGGTGCAGTAGAGAGAGCAACCTCTTTCATCACTGACGAGCTCTGGTATGGCATTTTTGCTGGAACAAATCCAGAAACGTTTGTTCGGGCGGAT GGAGCCTTCATTCCCTTTGCAGAAGATTTCAACATGAACAATGTCACTACATTAGTGAAAGGTGTGGGAGAGATCGGCGATGTCCATGTTATAGACTTGC AGTCTCCAATCAACAGTCTTATTGGTAGGCAAGTTATGAAAGTCGGAAGAAGCTCTGGCTTGACAACTGGTACAATCATGGCCTATGCTCTTGAGTACAA TGACGAGAAAGGAATTTGCTTTTTCACCGATTTCCTTGTCGTTGGCGAGAATCAGCAAACGTTTGATCTCGAAGGGGATAGTGGTAGCCTCATTCTCTTA ACTGGCGAGCCTGGAGAGAAGCCACGACCGGTTGGAATCATTTGGGGCGGGACTGCAAACCGTGGAAGGTTGAAGCTTAAAATCGGTCAACCGCCTGAAA ACTGGACTAGCGGAGTTGATCTTGGACGTCTACTTGACCTCCTTGAACTTGATCTCATCACAACATCAGGAGGACTTCAAGCTGCAGTGCACGACCAAAG AAACACATCAGCAGCGGTAATAGATTCTACAGTTGTCGGAGAATCGTCGCCTCTGGTGCCAGTTCCATCAAAAGAAAAAATGGAGGAGTGTTTCGAACCC TTTAATTTAAACTTTACTCAAGTTGAGTACGAGTCGCAGGAGAAGCCAACTCCACCCGAATTCCACATAGAGGATGGTGCAGAAGCTGCTCCAGGCGTGG AACACCAGTTCATTCCAAGCTTTACATTCGGACCCGAGAAGAAGCGACCGGATGATGATCCGGAACTAGAAAACCTTTCGGCTTTGAAGGATGGGGCTGA GGGCGATATGTGTGTGTCACTGCAGTTGGGTGAGCCTGAGGCTAAGAGAAGAAGACAATAA
AA sequence Show only first row Show all	>Lus10036208 pacid=23169436 polypeptide=Lus10036208 locus=Lus10036208.g ID=Lus10036208.BGIv1.0 annot-version=v1.0 MDRNRLDLRLHHSGSTQSEESALDMERNYCPHSNLPWSSPSSLQPLASGGQHSESNAAYFSWPTLSRLTDTAEDRANYFGNLQKGVLPEILGRLPTGQQA TTLLELMTIRAFHSKILRRFSHGTAIGFRIRRGVLTDIPAILVFVARKVHRQWLSHVQCLPSALEGPGGVWCDVDGVEFSYFGAPAPTPKEQLYSELVDG LRGGDPSIGSGSQVANQETYGTLGAIVKSRTGNRQVGFLTNRHVAVDLDYPNQKMFHPLPPSLGPGVYLGAVERATSFITDELWYGIFAGTNPETFVRAD GAFIPFAEDFNMNNVTTLVKGVGEIGDVHVIDLQSPINSLIGRQVMKVGRSSGLTTGTIMAYALEYNDEKGICFFTDFLVVGENQQTFDLEGDSGSLILL TGEPGEKPRPVGIIWGGTANRGRLKLKIGQPPENWTSGVDLGRLLDLLELDLITTSGGLQAAVHDQRNTSAAVIDSTVVGESSPLVPVPSKEKMEECFEP FNLNFTQVEYESQEKPTPPEFHIEDGAEAAPGVEHQFIPSFTFGPEKKRPDDDPELENLSALKDGAEGDMCVSLQLGEPEAKRRRQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45030			Trypsin family protein (.1.2)		Lus10036208 [exp]	0	1
AT2G45910			U-box domain-containing protei...		Lus10040825 [exp]	3.2	0.8169
AT2G27090			Protein of unknown function (D...		Lus10026763 [exp]	5.5	0.8123
					Lus10040028 [exp]	6.3	0.7600
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	9.8	0.7956
AT5G45030			Trypsin family protein (.1.2)		Lus10038347 [exp]	10.0	0.7938
AT3G09880		ATB' BETA, ATB'...	Protein phosphatase 2A regulat...		Lus10022612 [exp]	13.9	0.7712
AT2G42570		TBL39	TRICHOME BIREFRINGENCE-LIKE 39...		Lus10000620 [exp]	14.3	0.7133
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10009361 [exp]	14.9	0.7343
AT4G32300		SD2-5	S-domain-2 5 (.1)		Lus10000249 [exp]	16.2	0.7145
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	20.9	0.7225

Compare expression of checked genes

Lus10036208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.