Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19880 579 / 0 Glutathione S-transferase family protein (.1.2.3) AT5G45020 549 / 0 Glutathione S-transferase family protein (.1.2) AT5G44990 482 / 2e-172 Glutathione S-transferase family protein (.1.2.3) AT5G44000 226 / 3e-71 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038348 [exp] 674 / 0 AT4G19880 580 / 0.0 Glutathione S-transferase family protein (.1.2.3) Lus10014304 [exp] 523 / 0 AT4G19880 499 / 3e-179 Glutathione S-transferase family protein (.1.2.3) Lus10027233 [exp] 243 / 1e-77 AT5G44000 508 / 2e-180 Glutathione S-transferase family protein (.1) Lus10005510 [exp] 171 / 2e-51 AT4G19880 162 / 3e-48 Glutathione S-transferase family protein (.1.2.3) Lus10038943 [exp] 81 / 6e-17 AT5G44000 186 / 1e-55 Glutathione S-transferase family protein (.1) Lus10026012 [exp] 0 / 1 AT5G45020 123 / 3e-39 Glutathione S-transferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G121600 [exp] 582 / 0 AT4G19880 600 / 0.0 Glutathione S-transferase family protein (.1.2.3) Potri.014G192300 [exp] 224 / 2e-70 AT5G44000 493 / 2e-174 Glutathione S-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0497 [flax] [poplar] GST_C PF00043 [flax] [poplar] GST_C Glutathione S-transferase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036209 pacid=23169356 polypeptide=Lus10036209 locus=Lus10036209.g ID=Lus10036209.BGIv1.0 annot-version=v1.0 ATGGCTAGATCTGCGATCGATGAGCTGAGTCAGTCTGGAGCCTTTATGAGAAGTGCTTCAACTTTCCGGAACTTCATATCTAGGGATTCAAGTTCTCAAT TCCCTCCAGAATCAGGGAGGTATCATCTCTATGTATCTTATGCTTGCCCTTGGGCTTCCAGATGTCTTGCCTACTTGAAGATCAAAGGACTCGATTCCCA CATTAGCTTCACTTCTGTGAAACCAATATGGGGAAGAACTAAGGATAGTGATGAACATATGGGATGGGTATTCCCCAGCTCGGATACAGAAGAGCCAGGA GCTGATCCTGACTTCTTGAATGGAGCCAAAACCGTTAGGGACTTGTACGAGCTTGCTAGCACAAACTACGCCGGGAAGTACACAGTTCCTGTGCTGTGGG ACAAGAAGCTCAAGACTATAGTTAACAACGAAAGTGCGGAGATCATCCGGATGTTCAACACTGAATTCAACGACATAGCTGAGAACCCGGCATTAGATCT TTACCCTGCAGAACTAAGATCCCAGATTGATGCAGCCAACGAATGGATATACAGCGGGATAAACAACGGTGTATACAAATGTGGGTTTGCCAGGAAGCAA GCTCCTTACGAAGAGGCTATAAAAGAGCTGTATGAATGTCTGGACAAATGCGAGGAGATCCTGAGTAAGCAACGGTACATGTGCGGGGACACGCTGACCG AAACGGACATCAGGCTGTTCGTTACGCTAATCAGATTCGACGAGGTGTATGCTGTTCACTTCAAGTGCAACAAGAAGTTGTTGAGGGAGTACCCGAACGT GTTGAATTACACAAAGGAGATTTACCAGATCCCTGGGATGAGCTCTACTGTGAACATGGCTCACATCAAGCGCCACTATTATGGTAGCCATCCTTCTATC AATCCATTTGGAATCATCCCGCTTGGTCCGGATTTCGATTACTCCTCCCCACACGACAGAGACAGATTCTAG
AA sequence Show only first row Show all	>Lus10036209 pacid=23169356 polypeptide=Lus10036209 locus=Lus10036209.g ID=Lus10036209.BGIv1.0 annot-version=v1.0 MARSAIDELSQSGAFMRSASTFRNFISRDSSSQFPPESGRYHLYVSYACPWASRCLAYLKIKGLDSHISFTSVKPIWGRTKDSDEHMGWVFPSSDTEEPG ADPDFLNGAKTVRDLYELASTNYAGKYTVPVLWDKKLKTIVNNESAEIIRMFNTEFNDIAENPALDLYPAELRSQIDAANEWIYSGINNGVYKCGFARKQ APYEEAIKELYECLDKCEEILSKQRYMCGDTLTETDIRLFVTLIRFDEVYAVHFKCNKKLLREYPNVLNYTKEIYQIPGMSSTVNMAHIKRHYYGSHPSI NPFGIIPLGPDFDYSSPHDRDRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G19880			Glutathione S-transferase fami...		Lus10036209 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10035241 [exp]	1.7	0.9765
AT2G41380			S-adenosyl-L-methionine-depend...		Lus10001155 [exp]	2.8	0.9757
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10004870 [exp]	3.7	0.9709
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	3.9	0.9754
AT4G35160			O-methyltransferase family pro...		Lus10015311 [exp]	6.3	0.9669
AT5G04500			glycosyltransferase family pro...		Lus10038646 [exp]	6.8	0.9563
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	7.3	0.9723
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031146 [exp]	7.5	0.9632
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	9.4	0.9649
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10031388 [exp]	9.6	0.9734

Compare expression of checked genes

Lus10036209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.