Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39220 160 / 9e-45 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 157 / 1e-43 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 137 / 3e-36 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT3G63200 96 / 3e-22 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038349 [exp] 319 / 1e-106 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 221 / 8e-71 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10023512 [exp] 166 / 7e-47 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10040394 [exp] 154 / 1e-42 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10036526 [exp] 149 / 4e-41 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 149 / 9e-41 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10022040 [exp] 96 / 1e-22 AT3G63200 413 / 3e-145 PATATIN-like protein 9 (.1) Lus10042584 [exp] 89 / 4e-21 AT3G63200 239 / 3e-79 PATATIN-like protein 9 (.1) Lus10036213 [exp] 81 / 5e-19 AT4G29800 56 / 1e-10 PATATIN-like protein 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123900 [exp] 205 / 3e-62 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 202 / 2e-61 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.010G221700 [exp] 157 / 6e-44 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.008G040500 [exp] 155 / 4e-43 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.002G052600 [exp] 99 / 3e-23 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.005G210100 [exp] 97 / 1e-22 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036212 pacid=23169350 polypeptide=Lus10036212 locus=Lus10036212.g ID=Lus10036212.BGIv1.0 annot-version=v1.0 ATGCGTGCGCGGGGCGCGTCCCTCGTCTCAAGAGCCGACGCGGTCGAGATGGACGGCTACGATTTCAAGATGAGCGACGTCTCCCTCGCCACGTCGGCCG GGCCCACCGAACCAGTGGAGTTGAAATCCGTTGATAAAAAGACCAAAATCCTGGCAGTTAACGGAGGAACAGCGACGAATAATCCAACGGCTGCGGCGAT CACTCACGTCCTCCACAACAAGCAAGAGTTTCCACTATGTAACGGCGTCGAGGATCTGCTAGTCGTGTCCCTCGGCAACGGCGAGGAGAAGCTGTCTTCC TCGTCAGGATTCGCTACGCCTGCGAGATTCGTGCGGATCGCAGAGGAAGGAGCTTCGGACATGGTGGATCAATCTGTATCGATGGCGTTCGGTGAGTGTC GAGAGAGCAATTACTTCCGGATTCAAGGTAACGGTACGGTACCGCAAACGCCGAAAAGAGGGAATGATAAAATTGAGGATCTAATTGAAACTATAGAAGG GATGCTGAGGGCGGCGATCACTCACGTCCTCCACAACAAGCAAGAGTTTCCACTATGTAACGGCGTCGAGGATCTGCTAGTCGTGTCCCTCGGCAACGGC GAGGAGAAGCTGTCTTCCTCGTCAGGATTCGCTACGCCTGCGAGATTCGTGCGGATCGCAGAGGAAGGAGCTTCGGACATGGTGGATCAATCTGTATCGA TGGCGTTCGGTGAGTGTCGAGAGAGCAATTACTTCCGGATTCAAGGTAACGGTACGGTACCGCAAACGCCGAAAAGAGGGAATGATAAAATTGAGGATCT AATTGAAACTATAGAAGGGATGCTGAGGCACAAGAATGTGGAGTCGGTGCTTTTCAGGGGGAAGAAAATTGGGGAGAAAACGAATCTGGAGAAGCTGGAG TGGATCTCCGGCGAAATAATTAAGGAGCAAGGGAGGAGGAGGAGCAGTATTTTGCCGCCGGTGGTGTTGAAGCAAGCTGCGACTCCTAGAACTTCATCGG CCACCACGCTTTCGACGTTGTCGTCTTCCTGTTGA
AA sequence Show only first row Show all	>Lus10036212 pacid=23169350 polypeptide=Lus10036212 locus=Lus10036212.g ID=Lus10036212.BGIv1.0 annot-version=v1.0 MRARGASLVSRADAVEMDGYDFKMSDVSLATSAGPTEPVELKSVDKKTKILAVNGGTATNNPTAAAITHVLHNKQEFPLCNGVEDLLVVSLGNGEEKLSS SSGFATPARFVRIAEEGASDMVDQSVSMAFGECRESNYFRIQGNGTVPQTPKRGNDKIEDLIETIEGMLRAAITHVLHNKQEFPLCNGVEDLLVVSLGNG EEKLSSSSGFATPARFVRIAEEGASDMVDQSVSMAFGECRESNYFRIQGNGTVPQTPKRGNDKIEDLIETIEGMLRHKNVESVLFRGKKIGEKTNLEKLE WISGEIIKEQGRRRSSILPPVVLKQAATPRTSSATTLSTLSSSC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10036212 [exp]	0	1
AT5G47830			unknown protein		Lus10018732 [exp]	1.0	0.8474
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10038349 [exp]	3.6	0.7792
					Lus10021242 [exp]	7.1	0.8331
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Lus10002986 [exp]	8.2	0.8077
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10000690 [exp]	9.2	0.7821
AT5G25840			Protein of unknown function (D...		Lus10006044 [exp]	10.2	0.8092
AT1G61390			S-locus lectin protein kinase ...		Lus10018407 [exp]	12.7	0.7651
AT2G24400			SAUR-like auxin-responsive pro...		Lus10033348 [exp]	12.8	0.8039
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Lus10040393 [exp]	13.2	0.7977
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	14.9	0.8014

Compare expression of checked genes

Lus10036212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.