Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54950 54 / 4e-10 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT2G39220 54 / 6e-10 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT4G29800 49 / 2e-08 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038350 [exp] 98 / 8e-27 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10038349 [exp] 77 / 4e-18 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036212 [exp] 76 / 8e-18 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10040394 [exp] 59 / 1e-11 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 57 / 3e-11 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10036526 [exp] 57 / 4e-11 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 57 / 4e-11 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G123900 [exp] 62 / 5e-13 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 62 / 6e-13 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.008G040500 [exp] 52 / 2e-09 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 52 / 2e-09 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036213 pacid=23169447 polypeptide=Lus10036213 locus=Lus10036213.g ID=Lus10036213.BGIv1.0 annot-version=v1.0 ATGCTGAATCAGAAAATTGTGGAGTCGGTGCTGTTCAAGGGGAAGAAAATGGGGAAGAGTACGAATCTGGAGAGATTGGAGTGGGTTTCAGGGGAGGTGA TTAAAGAGGAAGGGAAGAGGAGAATTAACATTTTGCCGGCGGTGGTTTTGAACAAAGCGGGGGCGGCGACGGCGACTCCGAAGACTTCCTCTGCCACCAC GCTTTCCACATTCTCGCCTTCCTGCTAG
AA sequence Show only first row Show all	>Lus10036213 pacid=23169447 polypeptide=Lus10036213 locus=Lus10036213.g ID=Lus10036213.BGIv1.0 annot-version=v1.0 MLNQKIVESVLFKGKKMGKSTNLERLEWVSGEVIKEEGKRRINILPAVVLNKAGAATATPKTSSATTLSTFSPSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29800		PLP8, PLAIVD ,P...	PATATIN-like protein 8 (.1.2)		Lus10036213 [exp]	0	1
					Lus10019698 [exp]	1.7	0.9056
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	4.0	0.8935
AT3G23820		GAE6	UDP-D-glucuronate 4-epimerase ...		Lus10022552 [exp]	4.9	0.8970
AT5G21070			unknown protein		Lus10026764 [exp]	6.3	0.8921
AT2G26690			Major facilitator superfamily ...		Lus10018553 [exp]	6.9	0.8914
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	7.6	0.8971
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10004469 [exp]	9.9	0.8757
AT4G02500		ATXT2, XXT2	XYG XYLOSYLTRANSFERASE 2, ARAB...		Lus10037519 [exp]	10.2	0.8752
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	12.2	0.8731
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	15.5	0.8754

Compare expression of checked genes

Lus10036213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.