Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58350 622 / 0 ZW18 Putative serine esterase family protein (.1.2.3) AT1G09980 621 / 0 Putative serine esterase family protein (.1.2) AT4G25770 42 / 0.0007 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038351 [exp] 855 / 0 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2) Lus10042993 [exp] 46 / 5e-05 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 46 / 5e-05 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077700 [exp] 662 / 0 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 662 / 0 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.001G079400 [exp] 43 / 0.0004 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF05057 [flax] [poplar] DUF676 Putative serine esterase (DUF676)
Representative CDS sequence Show only first row Show all	>Lus10036214 pacid=23169367 polypeptide=Lus10036214 locus=Lus10036214.g ID=Lus10036214.BGIv1.0 annot-version=v1.0 ATGGATGGAGCAAGAACCGAAGAGTGGAATGGTCAATATGGATGTTTGCGTGATGGATGGAGCAAGAACCGAAGAGTGGAATGGTCAATATGGATGGTAT ATTCAAAGGTTGATATGCCTCATCATTATATTAGCAGCGGAAATGATGAACCTTCCCACAGCGTACCCAGAAGAGTTGCAGCTTTGTGGAAGTTAGCTAT TGATCCTGCTCAAGCTGCAGCCGCACGTGCTGAGCTTCATCGACGAAGCATAGCTCAAATGAGGATTAATACTTGTTCAATTCAAGACCTGTATATATTC GGTGACCCCTTGCGTATTCCTATTGTAAACATTGAACGTGTCATAAATGCACCACGGCGTACTATGAGTGAGAATTCATACTTCAAAAACATGGACATGA TAGATTCACACGGTCTGGGTTTGGAGCCTGATTTTGAGGCTGGAGACAAAGCATTGCATCCTACCATTCAACCAACCGGCCGCGACTTGAAGATTGTGGT TTTTGTGCATGGTTTTCAAGGACATCATCTAGATCTACGGCTCGTTCGGAATCAGTGGCTGTTGATAGACACCAAAATAGAGTTTCTGATGTCACAGGCA AATGAGGAGAAAACGTCTGGAGATTTTAGAGAAATGGGACAAAGACTAGCTCAAGAAGTGGTTGCTTTTGTCAAGAAGAAAATGGATAAAGTTTCAAGAT CAGGTCACTTGAGAGATATCAAGCTCAGCTTTGCCGGCCATTCTATTGGAAATGTAATCATAAGATCAGCACTATCAGAGGTTGTCATGGAGCCTTATCT AAGATACCTTTACACCTATGTTTCCGTATCTGGTCCACACTTGGGTTATCTATACAGTTCAAACTCTTTATTTAATTCTGGAATGTGGCTCTTGAAGAAG CTCAAGGGAACACAATGTATCCATCAGCTTACTTTCACAGATGACCCAGATCTCAGAAAAACTTTCTTCTACCAGCTTTGCCAGCACAAGACACTAGACC ACTTCAAAAATATAATCCTGATGTCATCACCCCAGGACGGTTATGTGCCTTACCATTCAGCTAGAATCGAACTGTGTCAAGCTGCAACCCTGGATCACTC CAAAAGGGGCAAGGTATTCCTGGAGATGCTGAATAACTGCTTGGATCAGATCCGGACGTCAACCACAGAGCAACGGTTGTTTATGCGATGCGATGTCAAC TTCGATACGACAGTTTACGGGAAGAACTTCAACACGTTCATTGGCCGGGCTGCACATATCGAGTTTCTGGAGTCTGATGTCTTTGCAAAGTTCATCATGT GGTCTTTCCCTGAACTATTCCGTTGA
AA sequence Show only first row Show all	>Lus10036214 pacid=23169367 polypeptide=Lus10036214 locus=Lus10036214.g ID=Lus10036214.BGIv1.0 annot-version=v1.0 MDGARTEEWNGQYGCLRDGWSKNRRVEWSIWMVYSKVDMPHHYISSGNDEPSHSVPRRVAALWKLAIDPAQAAAARAELHRRSIAQMRINTCSIQDLYIF GDPLRIPIVNIERVINAPRRTMSENSYFKNMDMIDSHGLGLEPDFEAGDKALHPTIQPTGRDLKIVVFVHGFQGHHLDLRLVRNQWLLIDTKIEFLMSQA NEEKTSGDFREMGQRLAQEVVAFVKKKMDKVSRSGHLRDIKLSFAGHSIGNVIIRSALSEVVMEPYLRYLYTYVSVSGPHLGYLYSSNSLFNSGMWLLKK LKGTQCIHQLTFTDDPDLRKTFFYQLCQHKTLDHFKNIILMSSPQDGYVPYHSARIELCQAATLDHSKRGKVFLEMLNNCLDQIRTSTTEQRLFMRCDVN FDTTVYGKNFNTFIGRAAHIEFLESDVFAKFIMWSFPELFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036214 [exp]	0	1
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10027686 [exp]	1.4	0.8168
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10031575 [exp]	2.6	0.8285
AT1G79830		GC5	golgin candidate 5 (.1.2.3.4)		Lus10011437 [exp]	6.7	0.8101
AT5G19670			Exostosin family protein (.1)		Lus10034951 [exp]	7.7	0.8043
AT1G06550			ATP-dependent caseinolytic (Cl...		Lus10007334 [exp]	9.2	0.7983
AT1G09980			Putative serine esterase fami...		Lus10038351 [exp]	13.0	0.7941
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	13.1	0.7402
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	13.1	0.7636
AT4G01810			Sec23/Sec24 protein transport ...		Lus10010078 [exp]	15.5	0.7354
AT5G01010			unknown protein		Lus10029706 [exp]	18.9	0.7943

Compare expression of checked genes

Lus10036214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.