Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58350 350 / 1e-115 ZW18 Putative serine esterase family protein (.1.2.3) AT1G09980 341 / 3e-111 Putative serine esterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038351 [exp] 657 / 0 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G077700 [exp] 434 / 1e-147 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 419 / 5e-142 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12394 [flax] [poplar] DUF3657 Protein FAM135
Representative CDS sequence Show only first row Show all	>Lus10036215 pacid=23169337 polypeptide=Lus10036215 locus=Lus10036215.g ID=Lus10036215.BGIv1.0 annot-version=v1.0 ATGTCAGAAACTGTGCAAGAGATTGCTGTTTACCTCCACAGGTTTCACAACCTTGACCTCTTCCAACAAGGATGGTACCAAATCAAGATTACCATGAGAT GGGAAGATGGTGAAATGATGTCTTTAGCAACTCCTGCAAGAGTTGTTCAATATGAAGCTCCTGATCTTGGCTTTGATGACGTATATGGAGTTTGGCGGAT TGATGATACGGATAATAGCTTCTTGACACCACCCTTCCGAATAAGATACGCTAGGCAGGATGTTCGGTTGTCTATGATGATATCATTTAATTTATCTCTG ACTAAATGTAAGGGTCCATCTTCCTCTGCTGTTATTATGAAGTTTGAGCTTTACCAAGCTCCCATAACTGAAAGTGGCCGTCAATTTCTGTCTACTTTGG ATGCATCCTCTGTTGCAGTCCACGAGTTTCGAGTTCCTCCTAAAGCTCTTCTAGGGGTGCATTCATATTGCCCTGTTTATTTTGATGCGTTTCATGCTGT GCTTGTTGATGTGAGCGTGCACGTCACCCTGTTACAATCTGGTCATTACAGGAAGGTACGCAGTGATTCTTCCGCAGAGGGAAATGATGGGATTAATCAA GACTTGGTACCTGTTGATCTGAAAGAAATTGCACTGGTTAAAGCCTTTCTAATGGCCCGCGACACATTGGTGGAAGAGATGCATAAACTTAGCAAAACCA TCAACCAAGTTATTGATTTAACTGAATTTAGAAGAAAGATGAATGATATCAAGATGTTAGACTCTGTCTGGCAAGCAAACTTGGGTACTGCAGACGGCGA AGTTTCTGGACAAGGCAAGCAACAAAATGGTCTTGAGACAGAAAATGCTCCAGTAGATTGTCTGAGTGAGAGGTTGGCTAACCCTTTATCAGTGGATGAA TGGGCAAATATTTTCCAGACATTGGGGTCCCAACAATCATACTTATGGGGAGTCTTTATGCAGTTTCACAGGTTTGCTTCTGTAGCTGGCTGA
AA sequence Show only first row Show all	>Lus10036215 pacid=23169337 polypeptide=Lus10036215 locus=Lus10036215.g ID=Lus10036215.BGIv1.0 annot-version=v1.0 MSETVQEIAVYLHRFHNLDLFQQGWYQIKITMRWEDGEMMSLATPARVVQYEAPDLGFDDVYGVWRIDDTDNSFLTPPFRIRYARQDVRLSMMISFNLSL TKCKGPSSSAVIMKFELYQAPITESGRQFLSTLDASSVAVHEFRVPPKALLGVHSYCPVYFDAFHAVLVDVSVHVTLLQSGHYRKVRSDSSAEGNDGINQ DLVPVDLKEIALVKAFLMARDTLVEEMHKLSKTINQVIDLTEFRRKMNDIKMLDSVWQANLGTADGEVSGQGKQQNGLETENAPVDCLSERLANPLSVDE WANIFQTLGSQQSYLWGVFMQFHRFASVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58350		ZW18	Putative serine esterase fami...		Lus10036215 [exp]	0	1
AT2G28520		VHA-A1	vacuolar proton ATPase A1 (.1)		Lus10036133 [exp]	4.2	0.9078
AT5G45160			Root hair defective 3 GTP-bind...		Lus10018282 [exp]	8.4	0.8850
AT5G19390			Rho GTPase activation protein ...		Lus10036048 [exp]	9.4	0.9053
AT1G79570			Protein kinase superfamily pro...		Lus10031750 [exp]	11.2	0.9016
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Lus10004801 [exp]	12.7	0.8164
AT5G54200			Transducin/WD40 repeat-like su...		Lus10039934 [exp]	14.1	0.8848
AT2G25800			Protein of unknown function (D...		Lus10013392 [exp]	18.7	0.8868
AT5G45160			Root hair defective 3 GTP-bind...		Lus10036197 [exp]	19.7	0.8722
AT4G31480			Coatomer, beta subunit (.1.2)		Lus10039684 [exp]	23.7	0.8749
AT5G45160			Root hair defective 3 GTP-bind...		Lus10038333 [exp]	24.9	0.8214

Compare expression of checked genes

Lus10036215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.