Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18820 740 / 0 Cpn60alpha2, EMB3007 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) AT2G28000 625 / 0 Cpn60alpha1, SLP, CH-CPN60A, CPN60A SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) AT1G55490 436 / 2e-146 Cpn60beta1, LEN1, CPN60B LESION INITIATION 1, chaperonin-60beta1, chaperonin 60 beta (.1.2) AT5G56500 428 / 2e-143 Cpn60beta3 chaperonin-60beta3, TCP-1/cpn60 chaperonin family protein (.1.2) AT3G13470 424 / 5e-142 Cpn60beta2 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) AT3G23990 370 / 3e-121 HSP60-3B, HSP60 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) AT1G26230 369 / 2e-120 Cpn60beta4 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) AT2G33210 363 / 1e-118 HSP60-2 heat shock protein 60-2 (.1.2) AT3G13860 359 / 5e-117 HSP60-3A heat shock protein 60-3A (.1) AT3G18190 58 / 1e-08 TCP-1/cpn60 chaperonin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038352 [exp] 1080 / 0 AT5G18820 767 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Lus10037386 [exp] 612 / 0 AT2G28000 960 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10041329 [exp] 530 / 0 AT2G28000 845 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Lus10013404 [exp] 435 / 4e-146 AT3G13470 1037 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10010321 [exp] 435 / 1e-145 AT3G13470 1041 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Lus10022832 [exp] 391 / 3e-129 AT3G23990 980 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011902 [exp] 389 / 1e-128 AT3G23990 964 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011898 [exp] 387 / 5e-128 AT3G23990 987 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Lus10011770 [exp] 375 / 4e-122 AT3G23990 994 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G122800 [exp] 828 / 0 AT5G18820 821 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.015G123600 [exp] 648 / 0 AT5G18820 641 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.004G213400 [exp] 639 / 0 AT2G28000 964 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.009G009300 [exp] 634 / 0 AT2G28000 919 / 0.0 SCHLEPPERLESS, chaperonin-60alpha1, CHLOROPLAST CHAPERONIN 60ALPHA, chaperonin-60alpha (.1) Potri.015G123200 [exp] 537 / 0 AT5G18820 552 / 0.0 embryo defective 3007, chaperonin-60alpha2, TCP-1/cpn60 chaperonin family protein (.1) Potri.001G002500 [exp] 431 / 1e-144 AT3G13470 1030 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.003G222400 [exp] 426 / 1e-142 AT3G13470 1033 / 0.0 chaperonin-60beta2, TCP-1/cpn60 chaperonin family protein (.1) Potri.010G135100 [exp] 389 / 2e-128 AT1G26230 813 / 0.0 chaperonin-60beta4, TCP-1/cpn60 chaperonin family protein (.1.2) Potri.001G054400 [exp] 387 / 7e-128 AT3G23990 1018 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1) Potri.003G173900 [exp] 383 / 3e-126 AT3G23990 1016 / 0.0 HEAT SHOCK PROTEIN 60-3B, heat shock protein 60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10036216 pacid=23169375 polypeptide=Lus10036216 locus=Lus10036216.g ID=Lus10036216.BGIv1.0 annot-version=v1.0 ATGCCTCCCTCCGCCACCTCCCTCTTAAAGCCACTCTTCCCTGTTCTGGATGCACAAACTACACCATCTCCCTTCTTTACACCATCTCCCTGGAGGAACC CAAAGACGGCGAGGAGGAAATTGACGGTGAGAGCTTGCGGGAAGAAGATATCTTATGGGAAACACTGCAGAGAGGGCATGCTAGCTGGAATTGATAAGCT CGCTGATGCTGTCTCTGTCACACTAGGGCCCAAGGGTAGAAACGTTGTTCTTTCTGAATCTAATGGGTCACTTAAGGTGGTGAATGATGGGGTTACGATT GCCAAGTCGATACAATTCTCGGATACGATGGAGAACGTCGGAGCTACGCTAATCCAAGAGGTTGCTGGCAAAGTGAATGCTTTGGCCGGTGATGGCACGA CAACTGCGATCATTTTGGCTCGCTCCATGATCAAATTCGGCATGCTAGCAGTTGGTTTCGGTACCAGTCCAATTTCTTTGAAGAGTGGAATTGATGCCAC AGTAAAAGAGCTGATCGAAATCTTGAAGGAGCATAGCTATCCAGTTAATGGGAGGGAAGATATTAAAGCAATTGCCTCGATATCTGCCGGAAACGATGAG TTTGTTGGCAACTTAATTGCTGACACTATTGAGAAAATTGGCCCTGACGGAGTTATCTCCCTCGAAACATCTCAGACTTCCGAAACCATTGTGATGATTG ATGAAGGGATGAAGGTGGTAGACAAGGGTTATATGTCACCTCATTTCATCACAAATCAGGAGAAGTCTATGGTAGAATTTGACAATGCGAAAGTTCTTGT AACAGACCAGAGAATCGACACTGTCCAAGAACTGATTCCCGTCTTAGAAAAGACTACTCAACTTAGCGTCCCGCTGCTAATCTTTGCCGAGCACATCTCG AAGCAAGTATTGGAAACACTGGTGGTCAACAAGATCCAAGGTTTACTAAATGTTGCAGTTGTGAAGTGTCCTGGCATTTTAGACGGGAAGAAAGCTATCC TGCAAGATATTGCCCTGATGACAGGTGCTGATTTTCTTTCTGGCGATCTCGGTCAGTCGCTTATTGGTGTAACCTCAGATCAGCTTGGCGTTGCACGGAA GATCACCATAACAGGCAATTCAACAACCATAGTTGCGGATCCTTCAATGAAACCCGAAATTCAAGCGAGAATTCTCGAGCTGAAGAAGAATCTTGCTGAA ACAGACAACTCACATTCTTCCAGAAAGCTGTCCGCGAGAATAGCTAAACTATCAGGTGGTGTTGCTGTGATTAAGGTTGGGGCACACACGGAAACAGAAC TCGAAGAGAAGAAGCTGAGACTCGAAGATGCAAAGAACGCAACTTTTGCTGCCATGGACGAAGGAATTGTTCCCGGTGGTGGTGCAGCATATGTGCATCT TTCGAAGCATGTTTCCGCCATAAAGAGTTCCATGTTGGATGAAAATGAGCAGGTCGGCGCTGATATTGTAGCAAAGGCACTTCTAGCACCTTCAAAAGCT ATTGCAGCTAATGCAGGAGTCGACGGTGAAGTTGTGGTGGAAAAGATTCGAGCTTGCGATTGGCGAATCGGATACAATGCCATGACCGGTACTTACGAAG ATCTCCTAAATGCCAGGGTAGCAGACCCGTGTAAGGTATCGAGGTGTGCTCTTCAAACGGCAGCTTCAATTGCTGGGATAGTTCTTACAACTGAAGCTGC ATTAGTTGAGAAAGTGAAAAAGCCCGAGCCAGCTTTTCCTGCACTTCCAGGAGTTACACCATGA
AA sequence Show only first row Show all	>Lus10036216 pacid=23169375 polypeptide=Lus10036216 locus=Lus10036216.g ID=Lus10036216.BGIv1.0 annot-version=v1.0 MPPSATSLLKPLFPVLDAQTTPSPFFTPSPWRNPKTARRKLTVRACGKKISYGKHCREGMLAGIDKLADAVSVTLGPKGRNVVLSESNGSLKVVNDGVTI AKSIQFSDTMENVGATLIQEVAGKVNALAGDGTTTAIILARSMIKFGMLAVGFGTSPISLKSGIDATVKELIEILKEHSYPVNGREDIKAIASISAGNDE FVGNLIADTIEKIGPDGVISLETSQTSETIVMIDEGMKVVDKGYMSPHFITNQEKSMVEFDNAKVLVTDQRIDTVQELIPVLEKTTQLSVPLLIFAEHIS KQVLETLVVNKIQGLLNVAVVKCPGILDGKKAILQDIALMTGADFLSGDLGQSLIGVTSDQLGVARKITITGNSTTIVADPSMKPEIQARILELKKNLAE TDNSHSSRKLSARIAKLSGGVAVIKVGAHTETELEEKKLRLEDAKNATFAAMDEGIVPGGGAAYVHLSKHVSAIKSSMLDENEQVGADIVAKALLAPSKA IAANAGVDGEVVVEKIRACDWRIGYNAMTGTYEDLLNARVADPCKVSRCALQTAASIAGIVLTTEAALVEKVKKPEPAFPALPGVTP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	0	1
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	1.0	0.8911
AT1G59990		RH22, EMB3108	RNA helicase 22, EMBRYO DEFECT...		Lus10010711 [exp]	5.7	0.8411
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	9.8	0.7685
AT1G30680			toprim domain-containing prote...		Lus10038434 [exp]	11.1	0.8410
AT1G79050			recA DNA recombination family ...		Lus10026204 [exp]	12.7	0.8103
AT4G20770			Pentatricopeptide repeat (PPR)...		Lus10038431 [exp]	13.6	0.8258
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Lus10031745 [exp]	14.1	0.8375
AT3G05340			Tetratricopeptide repeat (TPR)...		Lus10031504 [exp]	18.6	0.7834
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	20.3	0.8053
AT2G40540		ATKUP2, ATKT2, ...	potassium transporter 2 (.1.2)		Lus10030539 [exp]	26.5	0.7373

Compare expression of checked genes

Lus10036216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.