Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35110 2203 / 0 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) AT1G31160 212 / 7e-63 HINT2 ,HINT 2 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) AT3G56490 187 / 7e-55 HIT3, HINT1 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) AT5G48545 50 / 4e-06 HINT3 histidine triad nucleotide-binding 3 (.1) AT4G16566 43 / 0.0003 HINT4 histidine triad nucleotide-binding 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038353 [exp] 2038 / 0 AT2G35110 1796 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Lus10031011 [exp] 186 / 3e-54 AT3G56490 228 / 2e-78 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10035409 [exp] 180 / 2e-52 AT3G56490 224 / 1e-76 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Lus10025883 [exp] 52 / 8e-07 AT5G48545 223 / 1e-74 histidine triad nucleotide-binding 3 (.1) Lus10038220 [exp] 51 / 1e-06 AT5G48545 216 / 7e-72 histidine triad nucleotide-binding 3 (.1) Lus10028941 [exp] 45 / 0.0006 AT4G16563 489 / 2e-169 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G124400 [exp] 2364 / 0 AT2G35110 2305 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124500 [exp] 2271 / 0 AT2G35110 2139 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G123900 [exp] 868 / 0 AT2G35110 807 / 0.0 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124700 [exp] 221 / 4e-66 AT1G31160 224 / 1e-75 HISTIDINE TRIAD NUCLEOTIDE-BINDING 2 (.1) Potri.016G023700 [exp] 190 / 2e-55 AT3G56490 217 / 2e-73 HISTIDINE TRIAD NUCLEOTIDE-BINDING 1, HIS triad family protein 3 (.1) Potri.015G123001 [exp] 98 / 5e-24 AT2G35110 98 / 7e-25 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.015G124200 [exp] 87 / 1e-19 AT2G35110 87 / 2e-20 NCK-ASSOCIATED PROTEIN 1, GNARLED, transcription activators (.1.2) Potri.002G248800 [exp] 55 / 5e-08 AT5G48545 227 / 3e-76 histidine triad nucleotide-binding 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09735 [flax] [poplar] Nckap1 Membrane-associated apoptosis protein CL0265 [flax] [poplar] HIT PF01230 [flax] [poplar] HIT HIT domain
Representative CDS sequence Show only first row Show all	>Lus10036217 pacid=23169446 polypeptide=Lus10036217 locus=Lus10036217.g ID=Lus10036217.BGIv1.0 annot-version=v1.0 ATGGCCAAGTCACATCAGCAATTCTCGTCCCGTGATTCATCAATGTCACCCACTGCTGAAAGATCGAAGGAGTGGGAGGGTCCAGCAAGATGGACTGAAT ACTTGGGTCCTGATATGACATCCCCAGTGGTGTCGAGGTCCTCAAGGTTTAAGGGTTCAGATGGACATCATCAGGGTTCGGGTGCCTCATATAAGGGTTT AAACTTGCAGTGGGTAGTCCAACTGACCGAAGTGGCTGAAGGCCTGATGTCCAAAATGTACAGGCTAAATCAAATATTGGACTATCCAGATCCGATTTCT CATTCGTTTTCAGAAGGTTTCTGGAAGGCGGGCATATTCCCTAACCATCCTAGGATGTGCACATTGCTTTCCAAAAAGTTTCCTGATCATTTTAGCAAAC TGCAACTTGAGCGGGTTGACAAGCTGGCTTTGGATTCCTTGAATGATAACGCAGAAGTTCATTTGCAGAGCTTGGATCCGTGGATTCAGATGCTTCTTGA CCTGATGGCATTTCGGGAACAAGCACTGCGTCTCATATTGGATTTGAGCAGTACAGTTATCACCTTGTTACCCCATCAGAATTCACTTATACTGCATGCA TTTATGGATCTCTTCTGCTCCTTTGTCCGTGTAAATCTTTTCTCTGAGAAGATACCCAGGAAAATGATGTTGCAAGTGTATAACCTTCTCCATGCGATAT CAAGAAATGACAGAGACTGTGATTTTTATCATCGGCTGGTCCAATTCATAGACTCTTATGACCCACCTTTGAAAGGGCTACAAGAAGATCTAAATTTTGT AAGCCCACGTATTGGAGAGGTTTTAGAGGCAGTTGGACCAATAATTTTCCTATCTACTGACACAAAAAAGCTCAGGAATGAGGGGTTTTTGAGTCCTTAT CATCCTCGATATCCTGATATCCTAACAAATTCAGCTCATCCTATGAGAGCCCAAGATTTAGCTAATGTTACATCTTATCGGGAATGGGTGCTACTTGGAT ATCTTGTCTGTCCGGATGAACTTCTTCGAGTGACGAGCATTGACATCGCCCAGGTCGTTCTGAAAGAAAATTTGATTCTTACAGTATTCCGCGATGAGTA TGTTTTATTGCATGAAGATTATCAGTTATATGTTCTACCCCGGGTATTAGAATCGAAAAAGATGGCAAAATCTGGACGCTCCAAACAAAAGGAAGCAGAT CTGGAGTACAGTGTGGCTAAACAAGTTGAAAAGATGATAAGCGAAGTCCATGATCAGGCTCTCTTATCATGCGATGTCATCCATCGTGAAAGGAGAATAT TGTTAAAGCAGGAAATCGGAAGAATGGTTATGTTTTTCACTGATCAGCCAAGCTTATTGGCACCCAACATCCAGATGGTCTTTTCCGCTCTGGCATTGGC TCAATCTGAGGTGATCTGGTACTTTCAACATGTAGGAATTGCATCATCAAAATCTAAAGCTGCTCGAACAGTTGCAGTTGACTTGGACCCTAGTGATCCA ACTATTGGCTACTTATTAGATGGAATGGATCGGCTATGCTGTCTAGTACGCAAGTATATTGCAGCTATTCGAGGCTATGCATTGTCGTATCTTTCTTCTT GTGCTGGTCGCATCCGGTTTCTGTTGGGAACTCCCGGAATGGTGGCTCTTGACCTTGATGCCACCTTGAAAGGACTGTTTCAGCATATCGTTCATCACCT TGAAAATCTACCCAAGACACAAGGTGAAAATGCCATTACTTGTGATTTATCGGAGTTCCGCAAGGATTGGCTGTCAATATTGATGATTGTGACATCAGCA AGATCATCAATAAACATAAGACACTTGGAAAAAGCAACTGTTTCCACGGGGAAGGAAGGGTTACTATCAGAAGGAAATGCAGCCTATAATTGGTCTAGGT GCGTCGATGAACTTGAGTCCCAACTGTCTAAGCATGGAAGTCTGAAAAAGCTTTATTTTTATCACCAACACCTCACTGCGGTTTTCAGGAACACCATGTT TGGACCTGAAGGTCGCCCTCAGCATTGTTGTGCATGGCTTGGTGTGGCTAGTAGTTTTCCGGAATGTGCTTCACCAATTGTTGCGGAGGAGGTGACAAAA ATTGGGCGTGATGCTGTACTATATGTTGAATCTCTGATTGAATCTATTATGGGGGGATTGGAAGGACTGATTAATATTCTTGACTCGGAAGGGGGTTTCG GTGCTTTGGAGGCTCAGCTTCTTCCAGAGCAAGCAGCTCTCTACTTGAACAATGCATTGAGAGTATCCATTCCTTCGTCAAAGTCACCCAAGGGGGTTGG TGGCTTTGCTTTGCCTGGCCATGAGAGCTATCCTGAAAATACTGGTTCTGTGAAGATGTTAGAAGCTGCAATGCAAAGGTTGACCAACTTATGCTCCGTT CTAAATGATATGGAGCCTATATGTGTTCTAAATCATGTTTTTGTTCTGAGGGAGTACATGAGAGAGTGCATTCTAGGAAACTTCAGGAGAAGATTGTTGA CAGTACTGAAAACAGACAACGATCTTCAGCGTCCCTCGGTGCTCGAGTCTCTGATCCGTAGACACATGAGTATAATCCATCTAGCAGAGCACCACATTAG CATGGACCTGTCGCATGGTATGCGAGAAGCTCTCTTGACAGAGGCTTTCTGCGGACCAGTATCCTCTTTGCATTTGTTTGAGAAACCTGCGGAGGAGCTT TCCGGATCCGCCACTGAAATTGTGTGCAATTGGTACATCGAAAATATTGTCAAAGATGTGTCAGGTGCCGGGATCCTCTTCACACCCAAGCATGAATGCT TCAAAAGCACAAGGCCAGTCGGTGGATATTTTGCTGAATCAGTTACTGATCTCAGAGAATTGCAGGCCTTTGTACATATATTTGGTGGTTATGGAGTTGA TAGACTTGACAGATTGATGAAAGAGCACACAGCTGCCCTCTTGAATTGTATTGATACATCGCTGAGGTCAAATCGCGAGTTGCTAGAGTCTATTGCTGGA AGCATGCATTCTGGCGACCGGATAGAAAGAGAGACGTGCTCGAAGCAGATTCTAGACTTGGACACTGTAATTGGATTCTGCATAGAAGCAGGGCAAGCAC TTGCATTTGATGAGCTTCTAGCTGAAGCTGCAGGTCTTGTGCTTAAAGAAGGCGCACCATTGATTCATTCTCTAGTCACAGGAGTGATAAAGCACATACC TGAAGAAATACCAGAAAAGAAAGATATCAGACGGATAAGAGGTGTGGCTAACAGTGTTGGTATAGGCGGTGATCATGATTCTGAATGGGTAAGATCAATA TTGGAAGAGGTTGGTGGTGCCAATGATGGTTCATGGACCTTGCTGCCGTACTTATTTGCCACCTTCATGACATCAAACATTTGGTACACTACTGGTTTTA ATGTTGACACAGGAGGCTTCAACAATAATATCCATTGCTTGGCAAGGTGCATAAGTGCTGTGATTGCTGGAAGCGAATATGTGAAGTTGGAACGTGAACA TCGGCAGAGGCAGTCTCTCTCCAATGGCCATGCCGCTGAGGCTATGGACTCAGAAATGCATAGCCATTTGTCTGCTGAAGCAAGTACAAAGTCTGCAATG CAGCTTTTCGTCAAATTTTCTTCAGGAATCGTGCTAGATTCTTGGAGTGATGTCAACAGGTCTCATCTTGTGGCGAAGCTCATTTTCCTGGACCAGCTTT GCGAGATCTCACCATACCTTCCACGGAGCTCCCTAGAAGCCTACGTACCATACACAATTCTCAGGTCAATCTACAGCCAGTACTACTCAAACTCGCCATC TATGCCACTTGCTCTGCTCAACACTGCATCGCCTCGCCAGTCACCCGCTGTGCCATCAGGACACAGTTCCCCAGGCATCCGCCAGCATCGTGGGGACTCA ACACCTCAGTACGGTGTCAACGATACCTCTGGCTACTTCAAGGGATCTTCTTCATCCTACAGCCAGGAGCACATATACAATACTGACAGTGGAAGCATGA GAGGCAACAACAATGCGACAGTGGAAGCGTTGCTATGTGCCAGTAATGCTGTCAATGGTGAAGAGGCTGCCGCAAAAGCAGCTACTGCTAATCTCGATGA AGGAGCTCCCACCATCTTTGACAAGATCATAGCCAAGGAAATCCCTTCGTCAATTGTATATGAAGACGAGAAGGTCCTTGCATTTCGAGACATCAGTCCT CAAGCACCTGTTCATGTTGTAATCATTCCGAAAATCAGGGATGGGTTGACAGAGCTTGGGAAATCCGAAGCAAGGCATGGAGAAATCCTGGGGCAACTTC TGTATGCTGCGAAAATAGTTGCTGAAAAGGAAGGGATCGTTGATGGGTTTCGGGTCGTTATCAACAGTGGTCCTACCGCCTGTCAATCTGTTTATCATCT CCACTTGCATGTCCTGGGTGGAAGACAGATGAAGTGGCCTCCTGGTTAA
AA sequence Show only first row Show all	>Lus10036217 pacid=23169446 polypeptide=Lus10036217 locus=Lus10036217.g ID=Lus10036217.BGIv1.0 annot-version=v1.0 MAKSHQQFSSRDSSMSPTAERSKEWEGPARWTEYLGPDMTSPVVSRSSRFKGSDGHHQGSGASYKGLNLQWVVQLTEVAEGLMSKMYRLNQILDYPDPIS HSFSEGFWKAGIFPNHPRMCTLLSKKFPDHFSKLQLERVDKLALDSLNDNAEVHLQSLDPWIQMLLDLMAFREQALRLILDLSSTVITLLPHQNSLILHA FMDLFCSFVRVNLFSEKIPRKMMLQVYNLLHAISRNDRDCDFYHRLVQFIDSYDPPLKGLQEDLNFVSPRIGEVLEAVGPIIFLSTDTKKLRNEGFLSPY HPRYPDILTNSAHPMRAQDLANVTSYREWVLLGYLVCPDELLRVTSIDIAQVVLKENLILTVFRDEYVLLHEDYQLYVLPRVLESKKMAKSGRSKQKEAD LEYSVAKQVEKMISEVHDQALLSCDVIHRERRILLKQEIGRMVMFFTDQPSLLAPNIQMVFSALALAQSEVIWYFQHVGIASSKSKAARTVAVDLDPSDP TIGYLLDGMDRLCCLVRKYIAAIRGYALSYLSSCAGRIRFLLGTPGMVALDLDATLKGLFQHIVHHLENLPKTQGENAITCDLSEFRKDWLSILMIVTSA RSSINIRHLEKATVSTGKEGLLSEGNAAYNWSRCVDELESQLSKHGSLKKLYFYHQHLTAVFRNTMFGPEGRPQHCCAWLGVASSFPECASPIVAEEVTK IGRDAVLYVESLIESIMGGLEGLINILDSEGGFGALEAQLLPEQAALYLNNALRVSIPSSKSPKGVGGFALPGHESYPENTGSVKMLEAAMQRLTNLCSV LNDMEPICVLNHVFVLREYMRECILGNFRRRLLTVLKTDNDLQRPSVLESLIRRHMSIIHLAEHHISMDLSHGMREALLTEAFCGPVSSLHLFEKPAEEL SGSATEIVCNWYIENIVKDVSGAGILFTPKHECFKSTRPVGGYFAESVTDLRELQAFVHIFGGYGVDRLDRLMKEHTAALLNCIDTSLRSNRELLESIAG SMHSGDRIERETCSKQILDLDTVIGFCIEAGQALAFDELLAEAAGLVLKEGAPLIHSLVTGVIKHIPEEIPEKKDIRRIRGVANSVGIGGDHDSEWVRSI LEEVGGANDGSWTLLPYLFATFMTSNIWYTTGFNVDTGGFNNNIHCLARCISAVIAGSEYVKLEREHRQRQSLSNGHAAEAMDSEMHSHLSAEASTKSAM QLFVKFSSGIVLDSWSDVNRSHLVAKLIFLDQLCEISPYLPRSSLEAYVPYTILRSIYSQYYSNSPSMPLALLNTASPRQSPAVPSGHSSPGIRQHRGDS TPQYGVNDTSGYFKGSSSSYSQEHIYNTDSGSMRGNNNATVEALLCASNAVNGEEAAAKAATANLDEGAPTIFDKIIAKEIPSSIVYEDEKVLAFRDISP QAPVHVVIIPKIRDGLTELGKSEARHGEILGQLLYAAKIVAEKEGIVDGFRVVINSGPTACQSVYHLHLHVLGGRQMKWPPG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10036217 [exp]	0	1
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Lus10038353 [exp]	1.0	0.9823
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	6.0	0.9457
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	6.0	0.9450
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	6.2	0.9147
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	7.5	0.9378
AT5G12370		SEC10	exocyst complex component sec1...		Lus10036398 [exp]	9.8	0.9247
AT5G22780			Adaptor protein complex AP-2, ...		Lus10020522 [exp]	10.4	0.9154
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	10.7	0.9328
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Lus10040481 [exp]	11.5	0.9297
AT1G35220			unknown protein		Lus10010355 [exp]	11.8	0.9293

Compare expression of checked genes

Lus10036217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.