Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44860 229 / 4e-75 unknown protein AT4G19950 223 / 2e-72 unknown protein AT1G31130 218 / 1e-70 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018322 [exp] 214 / 8e-69 AT4G19950 417 / 3e-147 unknown protein Lus10017130 [exp] 204 / 5e-65 AT4G19950 410 / 1e-144 unknown protein Lus10018940 [exp] 84 / 8e-19 AT1G31130 231 / 8e-74 unknown protein Lus10028643 [exp] 74 / 3e-15 AT1G31130 228 / 1e-72 unknown protein Lus10038358 [exp] 52 / 1e-08 AT4G19950 183 / 1e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G125800 [exp] 234 / 6e-77 AT5G44860 396 / 4e-139 unknown protein Potri.015G125600 [exp] 232 / 3e-76 AT1G31130 327 / 7e-112 unknown protein Potri.005G186200 [exp] 94 / 1e-22 AT4G19950 185 / 3e-56 unknown protein Potri.007G105600 [exp] 94 / 2e-22 AT4G19950 179 / 7e-54 unknown protein Potri.007G105700 [exp] 91 / 2e-21 AT4G19950 182 / 4e-55 unknown protein Potri.002G074200 [exp] 60 / 1e-10 AT1G31130 128 / 3e-34 unknown protein Potri.005G184600 [exp] 53 / 4e-08 AT4G19950 133 / 3e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036220 pacid=23169342 polypeptide=Lus10036220 locus=Lus10036220.g ID=Lus10036220.BGIv1.0 annot-version=v1.0 ATGGATCTAGCACCGGAGGAGCTCCAGTTCCTGTCGATACCGGACATTCTCCGGGAATCAATCTCAATCCCGAAGCAATCCCCCAGAACTTTCTACCTCA TAACTCTAACCCTAATCTTCCCTCTCTCCTTCGCCATCCTCGCCCACTCCCTCTTCACTCACCCGATCCTCTCCCACCTCGAGAACCACCCGAACGACGC ACCGGCGACCACCCGCCATGAGTGGACCTTACTCCTCGTCTTCCAGTTCTTCTATCTCATCTTCCTCTTCGCCTTCTCCTTACTCTCCACCGCCGCTGTG GTCTTCACCGTCGCGTCGCTCTACACTTCCAAGCCGGTATCTTTCTCCTCAACCTTCTCCGCCATCCCCAAGGTGCTGAAGCGACTGTTCGTCACTTTCG TCTTTGTCGCCCTCCTCATGCTCGCTTACAACACCGTCTTCCTCATCTTCCTGGTCATCTTCATCCTCGCGATGGACACTCAGAACCCTCTCCTGGTGAT CTTCTCCCTCATCGCGATCTTCTCCTTGTTCCTCGTCGTCCACGTCTACATCACTGCCCTGTGGCACATGGGTCGGTGGTGGTTCACGGCGGAGAAGGGC ATGGAATTTTCACTAGGATTGTCGTCGGTGGGTTTCTGGTTGGGGTTTTGGTGA
AA sequence Show only first row Show all	>Lus10036220 pacid=23169342 polypeptide=Lus10036220 locus=Lus10036220.g ID=Lus10036220.BGIv1.0 annot-version=v1.0 MDLAPEELQFLSIPDILRESISIPKQSPRTFYLITLTLIFPLSFAILAHSLFTHPILSHLENHPNDAPATTRHEWTLLLVFQFFYLIFLFAFSLLSTAAV VFTVASLYTSKPVSFSSTFSAIPKVLKRLFVTFVFVALLMLAYNTVFLIFLVIFILAMDTQNPLLVIFSLIAIFSLFLVVHVYITALWHMGRWWFTAEKG MEFSLGLSSVGFWLGFW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44860			unknown protein		Lus10036220 [exp]	0	1
					Lus10041517 [exp]	1.0	0.9269
AT1G16210			unknown protein		Lus10012520 [exp]	1.4	0.8973
AT1G25400			unknown protein		Lus10041438 [exp]	3.2	0.8621
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	3.5	0.8605
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10017963 [exp]	4.0	0.8880
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10004712 [exp]	4.9	0.8758
AT4G29120			6-phosphogluconate dehydrogena...		Lus10034974 [exp]	6.5	0.8651
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	6.6	0.8615
AT3G52710			unknown protein		Lus10014206 [exp]	8.0	0.8304
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	9.3	0.8886

Compare expression of checked genes

Lus10036220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.