Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44800 77 / 2e-15 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038363 [exp] 464 / 8e-150 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123400 [exp] 118 / 2e-29 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.003G110100 [exp] 105 / 5e-25 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036224 pacid=23169440 polypeptide=Lus10036224 locus=Lus10036224.g ID=Lus10036224.BGIv1.0 annot-version=v1.0 ATGAGGTACAGCAATCTCCCTAGATTCGTCGATAGGTCATTGAATGCATTGCGGGATCTCCCGAGCTTCCCTGACCCAAACATACATTTCCATTCAAAGG GCAAAGAGGTAGACGGAAGCAGTTTGTCGGAGAACAAGCTACCTCATTGGCTTCGAGAAGCTGTAAGTGCTCCTCCTGCCAGAGCACTGCAGCCTGATAT ACCCCCTACTGTATCGGCTATAGCGCAGTCAGTTCGAATGCTCTATGGAGAAGATAAGTCTACGATTCCTCCTTTTGTCATACCTGGTCCTCCTCCTTCC CAGCCGAAGGATCCTAGGCGAGCTCTAAAGAGAAAGAAGAAGAAAAAGAGACCACATTTGCACACACAGTCCCCATTAGACAATGCTGGCAGTAGTAATG CTCTGAAGAGCAACATCGATGATAGTGTTGGCTTTCCTTCCTCTGAATCCCCGGCTCCACCTGATGTAAACATCCCACCTTTGGTTCCCGAGACTTCAGG AATTCCATTGAATGGATCCGAGGTAAACTCCCAACTTCCATCCTCCGAATCCCTGGCTCCACCCGATGCAAAGATCCCACCTTTGGTTCCTGAGACTTCG GGACTTCTATTGAATGGATCCAAGGTAAATTCCCAACTTCCTGATTCCAGCACAAGGAGCGCAAGTTTACCAGAGACCACGACACCCTTGCCCAAATCTG GCGATCTTGTCGAATGCTTAGATGTGCGGAGCTTACCTTCGAGCCCGATGCAAGAAGCTGCACTGGACGAGCGAAAAGATGAAGGTGACGGTGGTGGTGA GTGTAGGAAGACACCACCCGAGGAGGCGGTGATATCGTCAGAAGGAACGGTCTCTGAGGGTAATGTGAGTGATGATGATGAGCCACAGCTATAG
AA sequence Show only first row Show all	>Lus10036224 pacid=23169440 polypeptide=Lus10036224 locus=Lus10036224.g ID=Lus10036224.BGIv1.0 annot-version=v1.0 MRYSNLPRFVDRSLNALRDLPSFPDPNIHFHSKGKEVDGSSLSENKLPHWLREAVSAPPARALQPDIPPTVSAIAQSVRMLYGEDKSTIPPFVIPGPPPS QPKDPRRALKRKKKKKRPHLHTQSPLDNAGSSNALKSNIDDSVGFPSSESPAPPDVNIPPLVPETSGIPLNGSEVNSQLPSSESLAPPDAKIPPLVPETS GLLLNGSKVNSQLPDSSTRSASLPETTTPLPKSGDLVECLDVRSLPSSPMQEAALDERKDEGDGGGECRKTPPEEAVISSEGTVSEGNVSDDDEPQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Lus10036224 [exp]	0	1
AT5G44790		HMA7, RAN1	copper-exporting ATPase / resp...		Lus10031840 [exp]	3.5	0.8277
AT3G57810			Cysteine proteinases superfami...		Lus10008986 [exp]	7.4	0.8106
AT1G02000		GAE2	UDP-D-glucuronate 4-epimerase ...		Lus10023077 [exp]	8.2	0.8177
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Lus10003543 [exp]	9.2	0.7671
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	9.8	0.8417
AT5G04830			Nuclear transport factor 2 (NT...		Lus10008971 [exp]	11.5	0.7969
AT5G06460		ATUBA2 ,UBA 2	ARABIDOPSIS THALIANA UBIQUITI...		Lus10031292 [exp]	12.0	0.7715
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Lus10031273 [exp]	13.0	0.8322
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009011 [exp]	14.8	0.7384
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	14.9	0.7989

Compare expression of checked genes

Lus10036224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.