Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31040 158 / 2e-48 PLATZ transcription factor family protein (.1) AT2G12646 127 / 2e-36 PLATZ transcription factor family protein (.1) AT3G60670 123 / 7e-35 PLATZ transcription factor family protein (.1) AT2G27930 89 / 3e-22 PLATZ transcription factor family protein (.1) AT1G21000 87 / 6e-21 PLATZ transcription factor family protein (.1.2) AT1G43000 86 / 8e-21 PLATZ transcription factor family protein (.1) AT2G01818 86 / 2e-20 PLATZ transcription factor family protein (.1) AT1G32700 84 / 2e-20 PLATZ transcription factor family protein (.1.2) AT1G76590 84 / 7e-20 PLATZ transcription factor family protein (.1) AT4G17900 81 / 3e-19 PLATZ transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038365 [exp] 216 / 1e-71 AT1G31040 142 / 9e-42 PLATZ transcription factor family protein (.1) Lus10009283 [exp] 127 / 2e-36 AT3G60670 249 / 2e-83 PLATZ transcription factor family protein (.1) Lus10015881 [exp] 126 / 5e-36 AT3G60670 251 / 4e-84 PLATZ transcription factor family protein (.1) Lus10008814 [exp] 127 / 6e-36 AT2G12646 301 / 4e-103 PLATZ transcription factor family protein (.1) Lus10008031 [exp] 126 / 1e-35 AT2G12646 294 / 1e-100 PLATZ transcription factor family protein (.1) Lus10039989 [exp] 125 / 6e-35 AT2G12646 292 / 3e-99 PLATZ transcription factor family protein (.1) Lus10038103 [exp] 120 / 1e-33 AT2G12646 289 / 1e-98 PLATZ transcription factor family protein (.1) Lus10004577 [exp] 91 / 2e-22 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 90 / 7e-22 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G159200 [exp] 169 / 1e-52 AT1G31040 294 / 3e-101 PLATZ transcription factor family protein (.1) Potri.003G075600 [exp] 167 / 8e-52 AT1G31040 306 / 1e-105 PLATZ transcription factor family protein (.1) Potri.006G060500 [exp] 134 / 5e-39 AT2G12646 321 / 1e-111 PLATZ transcription factor family protein (.1) Potri.018G116000 [exp] 130 / 8e-38 AT2G12646 318 / 2e-110 PLATZ transcription factor family protein (.1) Potri.014G059300 [exp] 124 / 4e-35 AT3G60670 238 / 6e-79 PLATZ transcription factor family protein (.1) Potri.002G144900 [exp] 116 / 5e-32 AT3G60670 250 / 7e-84 PLATZ transcription factor family protein (.1) Potri.008G137300 [exp] 103 / 1e-27 AT2G01818 221 / 5e-73 PLATZ transcription factor family protein (.1) Potri.006G119400 [exp] 92 / 2e-23 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.010G103500 [exp] 94 / 4e-23 AT2G01818 217 / 1e-70 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 91 / 1e-22 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10036226 pacid=23169333 polypeptide=Lus10036226 locus=Lus10036226.g ID=Lus10036226.BGIv1.0 annot-version=v1.0 ATGGAGAGGAGGAAGAACGAGAAGAACGTATTCTGCTTGCTCTGCTGCCTCACAATTTGCCCTCACTGTTTCCCATCTCACCCTTCCCACCCTCTACTCC AGGTGAGGAGATATGTGTACCATGACGTGGTTCGACTCGAAGATCTCGAAAAGCTAATCGATTGCTCCTATATTCAGCCGTACACAATAAACAGTGCAAA GGTGATATTTCTGAAGCAAAGACCACAGTCAAGGTCTGGCAAGGCCGCCTCCTCTGCCAGCTTCTGTTCCACTTGTGACAGAATGCTCCAGCACCCTTTC CACTTCTGCTCCCTCGCTTGCAAGGTGGAACGCATGGCGGAGGAAGGGGAGAACATGGGTTGCATTCCTTTGATGGGAGGCAGCGAATCGGAGGACATGA TGATGATGACTAGTAGTAGTAGTGCTGCATTCTCCGGGTTCGACGATGAAGGCGGTGGTGGGCATCTCGAGCCGTCTTATAATTACGATATGGCGGGAGA AGCGGAGACGTCGGGATCGGGTGACGGTGAGAGGCAAAGGAGGGAGGAAGGAAAAGGAGAAAGAAGAAGAAGAAAGAGGCGGCGGGGTTGA
AA sequence Show only first row Show all	>Lus10036226 pacid=23169333 polypeptide=Lus10036226 locus=Lus10036226.g ID=Lus10036226.BGIv1.0 annot-version=v1.0 MERRKNEKNVFCLLCCLTICPHCFPSHPSHPLLQVRRYVYHDVVRLEDLEKLIDCSYIQPYTINSAKVIFLKQRPQSRSGKAASSASFCSTCDRMLQHPF HFCSLACKVERMAEEGENMGCIPLMGGSESEDMMMMTSSSSAAFSGFDDEGGGGHLEPSYNYDMAGEAETSGSGDGERQRREEGKGERRRRKRRRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31040			PLATZ transcription factor fam...		Lus10036226 [exp]	0	1
AT1G32420			F-box and associated interacti...		Lus10018969 [exp]	1.0	0.9035
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	4.2	0.8879
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10039303 [exp]	6.0	0.8874
AT3G22520			unknown protein		Lus10041202 [exp]	7.3	0.8950
AT2G05760			Xanthine/uracil permease famil...		Lus10035311 [exp]	10.6	0.8818
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10043010 [exp]	12.0	0.8682
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10036517 [exp]	15.5	0.8845
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Lus10019275 [exp]	18.3	0.8837
AT5G59190			subtilase family protein (.1)		Lus10009867 [exp]	19.0	0.8816
AT5G45380		ATDUR3	DEGRADATION OF UREA 3, solute:...		Lus10003564 [exp]	20.4	0.8158

Compare expression of checked genes

Lus10036226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.