Plant FIBer expression Database

Lus10036227 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G31070 808 / 0 GlcNAc1pUT1 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
AT2G35020 797 / 0 GlcNAc1pUT2 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
AT5G52560 75 / 4e-14 ATUSP UDP-sugar pyrophosphorylase (.1)
AT5G46420 58 / 8e-09 16S rRNA processing protein RimM family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038366
[exp]
939 / 0 AT1G31070 846 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 1 (.1.2)
Lus10028658
[exp]
73 / 2e-13 AT5G52560 1030 / 0.0 UDP-sugar pyrophosphorylase (.1)
Lus10000971
[exp]
70 / 2e-12 AT5G52560 1004 / 0.0 UDP-sugar pyrophosphorylase (.1)
Lus10011969
[exp]
49 / 6e-06 AT5G46420 579 / 0.0 16S rRNA processing protein RimM family (.1)
Lus10004590
[exp]
44 / 0.0004 AT5G46420 587 / 0.0 16S rRNA processing protein RimM family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G074700
[exp]
798 / 0 AT2G35020 825 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
Potri.001G159700
[exp]
781 / 0 AT2G35020 779 / 0.0 N-acetylglucosamine-1-phosphate uridylyltransferase 2 (.1)
Potri.002G077400
[exp]
76 / 2e-14 AT5G52560 1040 / 0.0 UDP-sugar pyrophosphorylase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0110 GT-A PF01704 UDPGP UTP--glucose-1-phosphate uridylyltransferase
Representative CDS sequence
>Lus10036227 pacid=23169424 polypeptide=Lus10036227 locus=Lus10036227.g ID=Lus10036227.BGIv1.0 annot-version=v1.0
ATGAGAGAACCGACGATGATCGACGGCAACAGCAACGCCTCCTCCTCGCCATTGCCCCCTCCTCCTCAGGCCTTGCTCGAGCGCCTCAAGGACTACGGCC
AGGAAGACGTGTTTTCTCTCTGGGAAGAGCTCTCCGCCGATGAACGCGACTTCCTCGTCAAGGACATCGAGAGTCTAGATCTCCCGAGGCTGGATCGGAT
AATCCGATGCTCACTTCAATCCCAAGCTCTGCCAGTAGCCGCCATTGAACCAGTGCCAGAGGGCAGTGTATCTACTGTGGAGGCCAGGACGATGGAAGAG
AAGGAGCGATGGTGGAAGATGGGATTAAAAGCAATCTCTGGCGGGAAGTTGGCTGTTCTTCTTTTATCTGGCGGTCAGGGAACGCGGCTTGGAAGTGATG
ATCCAAAAGGATGTTTCAACATCGGACTTCCATCTGGGAAGTCTCTTTTTCAACTTCAAGCTGAGAGGATTTTGTGTGCCCAAAGATTAGCTGCTCATGA
AGCTAGTGAAGGTTCTGGAGGTTCTGCACAAATTCATTGGTACATAATGACCAGTCCATTCACTGATGAATCAACGAGGAAATTTTTCGAATGGCACAAG
TACTTTGGCCTCGAAGCAGATCAAGTAACCTTCTTCCAGCAAGGCACAATACCTTCTGTTGCTAATGATGGTAGATTTATCATGGAGACTCCCTACAGAG
TTTCCAAGGCTCCAGATGGAAATGGAGGAGTATATTCAGCTCTTAAATCATCAAGATTATTGGACGATATGGCTTCAAGAGGGATTAAATATGTTGATTG
CTATGGAGTTGACAATGCCTTGGTCCGTGTTGCTGACCCAACATTTCTGGGATATTTCATTGACAAAGGAGTCTCTGCTGCTGCAAAAGTTGTTCGTAAG
GCTTATCCCCAAGAAAAGGTGGGTGTATTCGTAAGGAGGGGCAAAGGTGGACCTCTTACCGTTGTTGAGTACAGCGAGCTGGATCAGTCCTTAGCTTCAG
AAATCAATCAGCAAACTGGACGTCTTCGTTACTGTTGGAGTAATGTATGCCTACACATGTTCACCTTGGAATTTCTAAATCAAGTGGCAAATGGACTTGA
GAAAGATAGCACTTACCATCTCGCAGAGAAAAAGATCCCCTCAATTCATGGATTCACAATGGGATATAAACTCGAGCAATTCATATTCGACGCGTTTCCA
TATGCTCCTTCAACTGCTCTTTTTGAGGTATTGCGCGAAGAAGAGTTTGCCCCAGTGAAAAATGCCAACGGTTCGAATTACGACACTCCAGATAGCGCTA
GACTGCTTGTTCTTCGGCTTCACAGTCGTTGGGTCGTTGCTGCAGGTGGCTTCTTGACTCATTCCGTGCCCTTGTATGCAACAGGCGTTGAGGTAAACCC
GCTTTGTTCATACGCCGGAGAAAATCTCGAAGCAATCTGTCGTGGAAGGACGTTTCATGCACCTTGTGAAATAACGTTCTAG
AA sequence
>Lus10036227 pacid=23169424 polypeptide=Lus10036227 locus=Lus10036227.g ID=Lus10036227.BGIv1.0 annot-version=v1.0
MREPTMIDGNSNASSSPLPPPPQALLERLKDYGQEDVFSLWEELSADERDFLVKDIESLDLPRLDRIIRCSLQSQALPVAAIEPVPEGSVSTVEARTMEE
KERWWKMGLKAISGGKLAVLLLSGGQGTRLGSDDPKGCFNIGLPSGKSLFQLQAERILCAQRLAAHEASEGSGGSAQIHWYIMTSPFTDESTRKFFEWHK
YFGLEADQVTFFQQGTIPSVANDGRFIMETPYRVSKAPDGNGGVYSALKSSRLLDDMASRGIKYVDCYGVDNALVRVADPTFLGYFIDKGVSAAAKVVRK
AYPQEKVGVFVRRGKGGPLTVVEYSELDQSLASEINQQTGRLRYCWSNVCLHMFTLEFLNQVANGLEKDSTYHLAEKKIPSIHGFTMGYKLEQFIFDAFP
YAPSTALFEVLREEEFAPVKNANGSNYDTPDSARLLVLRLHSRWVVAAGGFLTHSVPLYATGVEVNPLCSYAGENLEAICRGRTFHAPCEITF

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G31070 GlcNAc1pUT1 N-acetylglucosamine-1-phosphat... Lus10036227
[exp]
0 1
AT5G26667 PYR6 P-loop containing nucleoside t... Lus10019509
[exp]
3.2 0.8689
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Lus10023792
[exp]
6.0 0.8337
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Lus10003712
[exp]
9.2 0.8647
AT1G23190 PGM3 phosphoglucomutase 3, Phosphog... Lus10001596
[exp]
9.3 0.7862
AT1G80690 PPPDE putative thiol peptidase... Lus10026215
[exp]
13.3 0.8491
AT5G11710 ENTH/VHS family protein (.1) Lus10005498
[exp]
14.8 0.8449
AT1G31070 GlcNAc1pUT1 N-acetylglucosamine-1-phosphat... Lus10038366
[exp]
15.7 0.8418
AT5G10840 Endomembrane protein 70 protei... Lus10042415
[exp]
16.6 0.8540
AT1G02570 unknown protein Lus10025023
[exp]
16.9 0.8255
AT5G18280 ATAPY2 apyrase 2 (.1.2) Lus10006546
[exp]
23.2 0.8394

Lus10036227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.